Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1583

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1582 and Shewana3_1583 are separated by 316 nucleotidesShewana3_1583 and Shewana3_R0069 are separated by 543 nucleotides Shewana3_1582: Shewana3_1582 - GntR family transcriptional regulator (RefSeq), at 1,851,282 to 1,851,953 _1582 Shewana3_1583: Shewana3_1583 - D,D-heptose 1,7-bisphosphate phosphatase (RefSeq), at 1,852,270 to 1,852,821 _1583 Shewana3_R0069: Shewana3_R0069 - 16S ribosomal RNA (RefSeq), at 1,853,365 to 1,854,919 _R0069 Position (kb) 1852 1853Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1851.499 kb on - strand, within Shewana3_1582at 1851.819 kb on + strand, within Shewana3_1582at 1852.121 kb on - strandat 1852.179 kb on + strandat 1852.260 kb on + strandat 1852.268 kb on - strandat 1852.268 kb on - strandat 1852.583 kb on - strand, within Shewana3_1583at 1852.661 kb on + strand, within Shewana3_1583at 1852.686 kb on + strand, within Shewana3_1583at 1852.741 kb on + strand, within Shewana3_1583at 1852.749 kb on - strand, within Shewana3_1583at 1852.948 kb on + strandat 1852.948 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,851,499 - Shewana3_1582 0.32 +1.3
1,851,819 + Shewana3_1582 0.80 +0.6
1,852,121 - -0.8
1,852,179 + -1.0
1,852,260 + +0.4
1,852,268 - +2.6
1,852,268 - +3.8
1,852,583 - Shewana3_1583 0.57 +4.5
1,852,661 + Shewana3_1583 0.71 +4.6
1,852,686 + Shewana3_1583 0.75 +4.8
1,852,741 + Shewana3_1583 0.85 +5.1
1,852,749 - Shewana3_1583 0.87 +4.2
1,852,948 + +0.3
1,852,948 + +1.8

Or see this region's nucleotide sequence