Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1545 and Shewana3_1546 are separated by 130 nucleotides Shewana3_1546 and Shewana3_1547 are separated by 321 nucleotides Shewana3_1547 and Shewana3_1548 are separated by 132 nucleotides Shewana3_1548 and Shewana3_1549 are separated by 486 nucleotides Shewana3_1549 and Shewana3_1550 are separated by 29 nucleotides
Shewana3_1545: Shewana3_1545 - hypothetical protein (RefSeq), at 1,802,402 to 1,803,313
_1545
Shewana3_1546: Shewana3_1546 - hypothetical protein (RefSeq), at 1,803,444 to 1,803,668
_1546
Shewana3_1547: Shewana3_1547 - hypothetical protein (RefSeq), at 1,803,990 to 1,804,082
_1547
Shewana3_1548: Shewana3_1548 - hypothetical protein (RefSeq), at 1,804,215 to 1,804,649
_1548
Shewana3_1549: Shewana3_1549 - transposase (RefSeq), at 1,805,136 to 1,805,531
_1549
Shewana3_1550: Shewana3_1550 - integrase catalytic subunit (RefSeq), at 1,805,561 to 1,806,364
_1550
Position (kb)
1804
1805 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1803.300 kb on + strand at 1803.428 kb on + strand at 1803.451 kb on - strand at 1803.560 kb on - strand, within Shewana3_1546 at 1803.891 kb on + strand at 1803.899 kb on - strand at 1803.940 kb on + strand at 1804.311 kb on - strand, within Shewana3_1548 at 1804.319 kb on + strand, within Shewana3_1548 at 1804.495 kb on + strand, within Shewana3_1548 at 1805.071 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,803,300 + +2.3 1,803,428 + +0.4 1,803,451 - -0.4 1,803,560 - Shewana3_1546 0.52 -1.6 1,803,891 + +0.9 1,803,899 - +0.8 1,803,940 + -0.0 1,804,311 - Shewana3_1548 0.22 -2.3 1,804,319 + Shewana3_1548 0.24 -0.1 1,804,495 + Shewana3_1548 0.64 -1.9 1,805,071 + -1.4
Or see this region's nucleotide sequence