Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1548

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1545 and Shewana3_1546 are separated by 130 nucleotidesShewana3_1546 and Shewana3_1547 are separated by 321 nucleotidesShewana3_1547 and Shewana3_1548 are separated by 132 nucleotidesShewana3_1548 and Shewana3_1549 are separated by 486 nucleotidesShewana3_1549 and Shewana3_1550 are separated by 29 nucleotides Shewana3_1545: Shewana3_1545 - hypothetical protein (RefSeq), at 1,802,402 to 1,803,313 _1545 Shewana3_1546: Shewana3_1546 - hypothetical protein (RefSeq), at 1,803,444 to 1,803,668 _1546 Shewana3_1547: Shewana3_1547 - hypothetical protein (RefSeq), at 1,803,990 to 1,804,082 _1547 Shewana3_1548: Shewana3_1548 - hypothetical protein (RefSeq), at 1,804,215 to 1,804,649 _1548 Shewana3_1549: Shewana3_1549 - transposase (RefSeq), at 1,805,136 to 1,805,531 _1549 Shewana3_1550: Shewana3_1550 - integrase catalytic subunit (RefSeq), at 1,805,561 to 1,806,364 _1550 Position (kb) 1804 1805Strain fitness (log2 ratio) -2 -1 0 1 2at 1803.300 kb on + strandat 1803.428 kb on + strandat 1803.451 kb on - strandat 1803.560 kb on - strand, within Shewana3_1546at 1803.891 kb on + strandat 1803.899 kb on - strandat 1803.940 kb on + strandat 1804.311 kb on - strand, within Shewana3_1548at 1804.319 kb on + strand, within Shewana3_1548at 1804.495 kb on + strand, within Shewana3_1548at 1805.071 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
1,803,300 + +2.3
1,803,428 + +0.4
1,803,451 - -0.4
1,803,560 - Shewana3_1546 0.52 -1.6
1,803,891 + +0.9
1,803,899 - +0.8
1,803,940 + -0.0
1,804,311 - Shewana3_1548 0.22 -2.3
1,804,319 + Shewana3_1548 0.24 -0.1
1,804,495 + Shewana3_1548 0.64 -1.9
1,805,071 + -1.4

Or see this region's nucleotide sequence