Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1424

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1422 and Shewana3_1423 are separated by 65 nucleotidesShewana3_1423 and Shewana3_1424 are separated by 34 nucleotidesShewana3_1424 and Shewana3_1425 are separated by 91 nucleotides Shewana3_1422: Shewana3_1422 - 4a-hydroxytetrahydrobiopterin dehydratase (RefSeq), at 1,651,742 to 1,653,025 _1422 Shewana3_1423: Shewana3_1423 - Dual specificity protein phosphatase (RefSeq), at 1,653,091 to 1,653,561 _1423 Shewana3_1424: Shewana3_1424 - phospholipase D/transphosphatidylase (RefSeq), at 1,653,596 to 1,655,230 _1424 Shewana3_1425: Shewana3_1425 - response regulator receiver modulated CheW protein (RefSeq), at 1,655,322 to 1,656,221 _1425 Position (kb) 1653 1654 1655 1656Strain fitness (log2 ratio) -1 0 1 2 3at 1653.177 kb on - strand, within Shewana3_1423at 1653.191 kb on + strand, within Shewana3_1423at 1653.357 kb on - strand, within Shewana3_1423at 1653.400 kb on + strand, within Shewana3_1423at 1653.817 kb on - strand, within Shewana3_1424at 1654.067 kb on + strand, within Shewana3_1424at 1654.123 kb on + strand, within Shewana3_1424at 1654.183 kb on + strand, within Shewana3_1424at 1654.446 kb on - strand, within Shewana3_1424at 1654.868 kb on - strand, within Shewana3_1424at 1655.078 kb on + strandat 1655.224 kb on - strandat 1655.229 kb on + strandat 1655.332 kb on + strandat 1655.381 kb on + strandat 1655.381 kb on + strandat 1655.420 kb on + strand, within Shewana3_1425at 1655.428 kb on - strand, within Shewana3_1425at 1655.542 kb on + strand, within Shewana3_1425at 1655.550 kb on - strand, within Shewana3_1425

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,653,177 - Shewana3_1423 0.18 -0.7
1,653,191 + Shewana3_1423 0.21 -0.9
1,653,357 - Shewana3_1423 0.56 -0.9
1,653,400 + Shewana3_1423 0.66 +0.6
1,653,817 - Shewana3_1424 0.14 +0.1
1,654,067 + Shewana3_1424 0.29 +1.0
1,654,123 + Shewana3_1424 0.32 +3.0
1,654,183 + Shewana3_1424 0.36 -0.1
1,654,446 - Shewana3_1424 0.52 +0.3
1,654,868 - Shewana3_1424 0.78 -1.1
1,655,078 + +0.5
1,655,224 - -1.7
1,655,229 + -0.8
1,655,332 + +0.4
1,655,381 + +0.1
1,655,381 + +0.1
1,655,420 + Shewana3_1425 0.11 +0.8
1,655,428 - Shewana3_1425 0.12 -0.5
1,655,542 + Shewana3_1425 0.24 -1.5
1,655,550 - Shewana3_1425 0.25 -0.4

Or see this region's nucleotide sequence