Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1397

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1395 and Shewana3_1396 are separated by 151 nucleotidesShewana3_1396 and Shewana3_1397 are separated by 271 nucleotidesShewana3_1397 and Shewana3_1398 are separated by 263 nucleotides Shewana3_1395: Shewana3_1395 - putative lipoprotein (RefSeq), at 1,610,831 to 1,611,541 _1395 Shewana3_1396: Shewana3_1396 - hypothetical protein (RefSeq), at 1,611,693 to 1,611,941 _1396 Shewana3_1397: Shewana3_1397 - patatin (RefSeq), at 1,612,213 to 1,613,337 _1397 Shewana3_1398: Shewana3_1398 - prolyl-tRNA synthetase (RefSeq), at 1,613,601 to 1,615,313 _1398 Position (kb) 1612 1613 1614Strain fitness (log2 ratio) -3 -2 -1 0 1at 1611.335 kb on + strand, within Shewana3_1395at 1611.402 kb on - strand, within Shewana3_1395at 1611.414 kb on - strand, within Shewana3_1395at 1611.456 kb on + strandat 1611.484 kb on + strandat 1611.717 kb on - strandat 1611.873 kb on - strand, within Shewana3_1396at 1612.133 kb on - strandat 1612.133 kb on - strandat 1612.133 kb on - strandat 1612.141 kb on + strandat 1612.292 kb on + strandat 1612.387 kb on - strand, within Shewana3_1397at 1612.422 kb on + strand, within Shewana3_1397at 1612.460 kb on - strand, within Shewana3_1397at 1613.050 kb on - strand, within Shewana3_1397at 1613.232 kb on + strandat 1613.240 kb on - strandat 1613.314 kb on + strandat 1613.322 kb on - strandat 1613.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,611,335 + Shewana3_1395 0.71 -1.0
1,611,402 - Shewana3_1395 0.80 -1.0
1,611,414 - Shewana3_1395 0.82 -2.8
1,611,456 + -0.8
1,611,484 + -0.9
1,611,717 - +0.1
1,611,873 - Shewana3_1396 0.72 +0.1
1,612,133 - -0.4
1,612,133 - -1.0
1,612,133 - +0.9
1,612,141 + -1.8
1,612,292 + +0.5
1,612,387 - Shewana3_1397 0.15 +0.1
1,612,422 + Shewana3_1397 0.19 -2.0
1,612,460 - Shewana3_1397 0.22 -0.5
1,613,050 - Shewana3_1397 0.74 -1.8
1,613,232 + -0.6
1,613,240 - -2.3
1,613,314 + -0.8
1,613,322 - -2.3
1,613,595 - -2.6

Or see this region's nucleotide sequence