Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1393 and Shewana3_1394 overlap by 1 nucleotides Shewana3_1394 and Shewana3_1395 are separated by 10 nucleotides Shewana3_1395 and Shewana3_1396 are separated by 151 nucleotides
Shewana3_1393: Shewana3_1393 - protein of unknown function DUF940, membrane lipoprotein putative (RefSeq), at 1,607,657 to 1,610,032
_1393
Shewana3_1394: Shewana3_1394 - hypothetical protein (RefSeq), at 1,610,032 to 1,610,820
_1394
Shewana3_1395: Shewana3_1395 - putative lipoprotein (RefSeq), at 1,610,831 to 1,611,541
_1395
Shewana3_1396: Shewana3_1396 - hypothetical protein (RefSeq), at 1,611,693 to 1,611,941
_1396
Position (kb)
1610
1611 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1609.037 kb on + strand, within Shewana3_1393 at 1609.199 kb on - strand, within Shewana3_1393 at 1609.369 kb on - strand, within Shewana3_1393 at 1609.533 kb on + strand, within Shewana3_1393 at 1609.635 kb on + strand, within Shewana3_1393 at 1609.687 kb on - strand, within Shewana3_1393 at 1610.133 kb on - strand, within Shewana3_1394 at 1610.252 kb on - strand, within Shewana3_1394 at 1610.485 kb on - strand, within Shewana3_1394 at 1610.583 kb on - strand, within Shewana3_1394 at 1610.824 kb on + strand at 1611.335 kb on + strand, within Shewana3_1395 at 1611.402 kb on - strand, within Shewana3_1395 at 1611.414 kb on - strand, within Shewana3_1395 at 1611.456 kb on + strand at 1611.484 kb on + strand at 1611.717 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,609,037 + Shewana3_1393 0.58 -2.6 1,609,199 - Shewana3_1393 0.65 -1.0 1,609,369 - Shewana3_1393 0.72 +0.5 1,609,533 + Shewana3_1393 0.79 -1.2 1,609,635 + Shewana3_1393 0.83 -1.9 1,609,687 - Shewana3_1393 0.85 -1.0 1,610,133 - Shewana3_1394 0.13 -0.6 1,610,252 - Shewana3_1394 0.28 -1.4 1,610,485 - Shewana3_1394 0.57 -0.9 1,610,583 - Shewana3_1394 0.70 -0.1 1,610,824 + +0.3 1,611,335 + Shewana3_1395 0.71 -1.0 1,611,402 - Shewana3_1395 0.80 -1.0 1,611,414 - Shewana3_1395 0.82 -2.8 1,611,456 + -0.8 1,611,484 + -0.9 1,611,717 - +0.1
Or see this region's nucleotide sequence