Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1374

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1373 and Shewana3_1374 are separated by 474 nucleotidesShewana3_1374 and Shewana3_1375 are separated by 650 nucleotides Shewana3_1373: Shewana3_1373 - amino acid/peptide transporter (RefSeq), at 1,585,825 to 1,587,294 _1373 Shewana3_1374: Shewana3_1374 - transcription antitermination protein nusG (RefSeq), at 1,587,769 to 1,588,269 _1374 Shewana3_1375: Shewana3_1375 - polysaccharide export protein (RefSeq), at 1,588,920 to 1,591,433 _1375 Position (kb) 1587 1588 1589Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1587.235 kb on - strandat 1587.422 kb on - strandat 1587.552 kb on - strandat 1587.746 kb on + strandat 1587.746 kb on + strandat 1587.749 kb on - strandat 1587.952 kb on + strand, within Shewana3_1374at 1587.962 kb on + strand, within Shewana3_1374at 1587.972 kb on + strand, within Shewana3_1374at 1588.054 kb on + strand, within Shewana3_1374at 1588.256 kb on - strandat 1588.430 kb on - strandat 1588.505 kb on + strandat 1588.727 kb on + strandat 1588.735 kb on - strandat 1588.857 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,587,235 - +1.7
1,587,422 - +0.1
1,587,552 - -1.3
1,587,746 + -1.9
1,587,746 + -0.3
1,587,749 - -2.2
1,587,952 + Shewana3_1374 0.37 -3.2
1,587,962 + Shewana3_1374 0.39 +0.2
1,587,972 + Shewana3_1374 0.41 -2.2
1,588,054 + Shewana3_1374 0.57 +2.4
1,588,256 - -2.1
1,588,430 - -1.1
1,588,505 + -0.9
1,588,727 + -1.0
1,588,735 - +2.0
1,588,857 + -1.8

Or see this region's nucleotide sequence