Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1291

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1289 and Shewana3_1290 overlap by 4 nucleotidesShewana3_1290 and Shewana3_1291 are separated by 2 nucleotidesShewana3_1291 and Shewana3_1292 overlap by 4 nucleotidesShewana3_1292 and Shewana3_1293 are separated by 735 nucleotides Shewana3_1289: Shewana3_1289 - conjugal transfer protein TrbF (RefSeq), at 1,500,181 to 1,500,885 _1289 Shewana3_1290: Shewana3_1290 - conjugal transfer protein TrbG/VirB9/CagX (RefSeq), at 1,500,882 to 1,501,874 _1290 Shewana3_1291: Shewana3_1291 - conjugation TrbI family protein (RefSeq), at 1,501,877 to 1,503,157 _1291 Shewana3_1292: Shewana3_1292 - hypothetical protein (RefSeq), at 1,503,154 to 1,503,399 _1292 Shewana3_1293: Shewana3_1293 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,504,135 to 1,506,138 _1293 Position (kb) 1501 1502 1503 1504Strain fitness (log2 ratio) -2 -1 0 1at 1501.022 kb on + strand, within Shewana3_1290at 1501.075 kb on - strand, within Shewana3_1290at 1501.075 kb on - strand, within Shewana3_1290at 1501.173 kb on + strand, within Shewana3_1290at 1501.202 kb on - strand, within Shewana3_1290at 1501.240 kb on - strand, within Shewana3_1290at 1501.374 kb on - strand, within Shewana3_1290at 1501.379 kb on - strand, within Shewana3_1290at 1501.556 kb on + strand, within Shewana3_1290at 1501.681 kb on + strand, within Shewana3_1290at 1501.764 kb on + strand, within Shewana3_1290at 1502.307 kb on - strand, within Shewana3_1291at 1502.368 kb on + strand, within Shewana3_1291at 1502.376 kb on - strand, within Shewana3_1291at 1502.376 kb on - strand, within Shewana3_1291at 1502.610 kb on - strand, within Shewana3_1291at 1503.161 kb on + strandat 1503.197 kb on - strand, within Shewana3_1292at 1503.284 kb on - strand, within Shewana3_1292at 1503.284 kb on - strand, within Shewana3_1292at 1503.361 kb on + strand, within Shewana3_1292at 1503.693 kb on + strandat 1503.694 kb on + strandat 1503.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,501,022 + Shewana3_1290 0.14 +0.3
1,501,075 - Shewana3_1290 0.19 -0.4
1,501,075 - Shewana3_1290 0.19 -0.9
1,501,173 + Shewana3_1290 0.29 -1.9
1,501,202 - Shewana3_1290 0.32 +0.3
1,501,240 - Shewana3_1290 0.36 -0.8
1,501,374 - Shewana3_1290 0.50 +0.8
1,501,379 - Shewana3_1290 0.50 -0.4
1,501,556 + Shewana3_1290 0.68 -1.8
1,501,681 + Shewana3_1290 0.80 +0.1
1,501,764 + Shewana3_1290 0.89 +0.8
1,502,307 - Shewana3_1291 0.34 -1.9
1,502,368 + Shewana3_1291 0.38 +0.3
1,502,376 - Shewana3_1291 0.39 -0.7
1,502,376 - Shewana3_1291 0.39 -1.4
1,502,610 - Shewana3_1291 0.57 -0.6
1,503,161 + -2.6
1,503,197 - Shewana3_1292 0.17 +0.3
1,503,284 - Shewana3_1292 0.53 +0.4
1,503,284 - Shewana3_1292 0.53 +0.5
1,503,361 + Shewana3_1292 0.84 +0.0
1,503,693 + +0.7
1,503,694 + +0.7
1,503,928 - +0.2

Or see this region's nucleotide sequence