Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1248

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1246 and Shewana3_1247 are separated by 25 nucleotidesShewana3_1247 and Shewana3_1248 are separated by 13 nucleotidesShewana3_1248 and Shewana3_1249 are separated by 165 nucleotides Shewana3_1246: Shewana3_1246 - transcriptional regulator-like protein (RefSeq), at 1,460,354 to 1,460,659 _1246 Shewana3_1247: Shewana3_1247 - hypothetical protein (RefSeq), at 1,460,685 to 1,461,503 _1247 Shewana3_1248: Shewana3_1248 - hypothetical protein (RefSeq), at 1,461,517 to 1,462,800 _1248 Shewana3_1249: Shewana3_1249 - ATPase-like protein (RefSeq), at 1,462,966 to 1,463,565 _1249 Position (kb) 1461 1462 1463Strain fitness (log2 ratio) -2 -1 0 1at 1460.854 kb on - strand, within Shewana3_1247at 1460.982 kb on - strand, within Shewana3_1247at 1461.091 kb on - strand, within Shewana3_1247at 1461.225 kb on - strand, within Shewana3_1247at 1461.356 kb on + strand, within Shewana3_1247at 1461.356 kb on + strand, within Shewana3_1247at 1461.364 kb on - strand, within Shewana3_1247at 1461.409 kb on + strand, within Shewana3_1247at 1461.498 kb on + strandat 1461.643 kb on - strandat 1461.718 kb on + strand, within Shewana3_1248at 1461.736 kb on - strand, within Shewana3_1248at 1461.799 kb on - strand, within Shewana3_1248at 1461.859 kb on + strand, within Shewana3_1248at 1461.859 kb on + strand, within Shewana3_1248at 1461.859 kb on + strand, within Shewana3_1248at 1461.872 kb on - strand, within Shewana3_1248at 1462.517 kb on + strand, within Shewana3_1248at 1462.806 kb on + strandat 1463.036 kb on + strand, within Shewana3_1249at 1463.042 kb on - strand, within Shewana3_1249at 1463.198 kb on - strand, within Shewana3_1249at 1463.260 kb on + strand, within Shewana3_1249at 1463.318 kb on + strand, within Shewana3_1249at 1463.356 kb on - strand, within Shewana3_1249at 1463.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,460,854 - Shewana3_1247 0.21 -0.7
1,460,982 - Shewana3_1247 0.36 -0.3
1,461,091 - Shewana3_1247 0.50 +0.5
1,461,225 - Shewana3_1247 0.66 -1.6
1,461,356 + Shewana3_1247 0.82 +0.7
1,461,356 + Shewana3_1247 0.82 +0.4
1,461,364 - Shewana3_1247 0.83 -1.5
1,461,409 + Shewana3_1247 0.88 +0.2
1,461,498 + +0.4
1,461,643 - +1.5
1,461,718 + Shewana3_1248 0.16 +0.2
1,461,736 - Shewana3_1248 0.17 +0.1
1,461,799 - Shewana3_1248 0.22 +1.3
1,461,859 + Shewana3_1248 0.27 +0.3
1,461,859 + Shewana3_1248 0.27 +1.6
1,461,859 + Shewana3_1248 0.27 +0.4
1,461,872 - Shewana3_1248 0.28 +1.4
1,462,517 + Shewana3_1248 0.78 -0.2
1,462,806 + +1.2
1,463,036 + Shewana3_1249 0.12 -0.3
1,463,042 - Shewana3_1249 0.13 -1.1
1,463,198 - Shewana3_1249 0.39 -0.3
1,463,260 + Shewana3_1249 0.49 -1.9
1,463,318 + Shewana3_1249 0.59 -0.7
1,463,356 - Shewana3_1249 0.65 -0.6
1,463,615 - +0.6

Or see this region's nucleotide sequence