Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1246 and Shewana3_1247 are separated by 25 nucleotides Shewana3_1247 and Shewana3_1248 are separated by 13 nucleotides Shewana3_1248 and Shewana3_1249 are separated by 165 nucleotides
Shewana3_1246: Shewana3_1246 - transcriptional regulator-like protein (RefSeq), at 1,460,354 to 1,460,659
_1246
Shewana3_1247: Shewana3_1247 - hypothetical protein (RefSeq), at 1,460,685 to 1,461,503
_1247
Shewana3_1248: Shewana3_1248 - hypothetical protein (RefSeq), at 1,461,517 to 1,462,800
_1248
Shewana3_1249: Shewana3_1249 - ATPase-like protein (RefSeq), at 1,462,966 to 1,463,565
_1249
Position (kb)
1461
1462
1463 Strain fitness (log2 ratio)
-2
-1
0
1 at 1460.854 kb on - strand, within Shewana3_1247 at 1460.982 kb on - strand, within Shewana3_1247 at 1461.091 kb on - strand, within Shewana3_1247 at 1461.225 kb on - strand, within Shewana3_1247 at 1461.356 kb on + strand, within Shewana3_1247 at 1461.356 kb on + strand, within Shewana3_1247 at 1461.364 kb on - strand, within Shewana3_1247 at 1461.409 kb on + strand, within Shewana3_1247 at 1461.498 kb on + strand at 1461.643 kb on - strand at 1461.718 kb on + strand, within Shewana3_1248 at 1461.736 kb on - strand, within Shewana3_1248 at 1461.799 kb on - strand, within Shewana3_1248 at 1461.859 kb on + strand, within Shewana3_1248 at 1461.859 kb on + strand, within Shewana3_1248 at 1461.859 kb on + strand, within Shewana3_1248 at 1461.872 kb on - strand, within Shewana3_1248 at 1462.517 kb on + strand, within Shewana3_1248 at 1462.806 kb on + strand at 1463.036 kb on + strand, within Shewana3_1249 at 1463.042 kb on - strand, within Shewana3_1249 at 1463.198 kb on - strand, within Shewana3_1249 at 1463.260 kb on + strand, within Shewana3_1249 at 1463.318 kb on + strand, within Shewana3_1249 at 1463.356 kb on - strand, within Shewana3_1249 at 1463.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,460,854 - Shewana3_1247 0.21 -0.7 1,460,982 - Shewana3_1247 0.36 -0.3 1,461,091 - Shewana3_1247 0.50 +0.5 1,461,225 - Shewana3_1247 0.66 -1.6 1,461,356 + Shewana3_1247 0.82 +0.7 1,461,356 + Shewana3_1247 0.82 +0.4 1,461,364 - Shewana3_1247 0.83 -1.5 1,461,409 + Shewana3_1247 0.88 +0.2 1,461,498 + +0.4 1,461,643 - +1.5 1,461,718 + Shewana3_1248 0.16 +0.2 1,461,736 - Shewana3_1248 0.17 +0.1 1,461,799 - Shewana3_1248 0.22 +1.3 1,461,859 + Shewana3_1248 0.27 +0.3 1,461,859 + Shewana3_1248 0.27 +1.6 1,461,859 + Shewana3_1248 0.27 +0.4 1,461,872 - Shewana3_1248 0.28 +1.4 1,462,517 + Shewana3_1248 0.78 -0.2 1,462,806 + +1.2 1,463,036 + Shewana3_1249 0.12 -0.3 1,463,042 - Shewana3_1249 0.13 -1.1 1,463,198 - Shewana3_1249 0.39 -0.3 1,463,260 + Shewana3_1249 0.49 -1.9 1,463,318 + Shewana3_1249 0.59 -0.7 1,463,356 - Shewana3_1249 0.65 -0.6 1,463,615 - +0.6
Or see this region's nucleotide sequence