Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1242 and Shewana3_1243 are separated by 18 nucleotides Shewana3_1243 and Shewana3_1244 are separated by 231 nucleotides
Shewana3_1242: Shewana3_1242 - cytochrome d ubiquinol oxidase, subunit II (RefSeq), at 1,457,124 to 1,458,263
_1242
Shewana3_1243: Shewana3_1243 - cyd operon protein YbgT (RefSeq), at 1,458,282 to 1,458,398
_1243
Shewana3_1244: Shewana3_1244 - phage integrase family protein (RefSeq), at 1,458,630 to 1,459,829
_1244
Position (kb)
1458
1459 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1457.310 kb on + strand, within Shewana3_1242 at 1457.542 kb on + strand, within Shewana3_1242 at 1457.640 kb on + strand, within Shewana3_1242 at 1457.667 kb on - strand, within Shewana3_1242 at 1457.701 kb on + strand, within Shewana3_1242 at 1457.709 kb on - strand, within Shewana3_1242 at 1457.738 kb on + strand, within Shewana3_1242 at 1457.740 kb on + strand, within Shewana3_1242 at 1457.843 kb on + strand, within Shewana3_1242 at 1457.851 kb on - strand, within Shewana3_1242 at 1457.916 kb on + strand, within Shewana3_1242 at 1458.050 kb on + strand, within Shewana3_1242 at 1458.179 kb on + strand at 1458.365 kb on + strand, within Shewana3_1243 at 1458.416 kb on - strand at 1458.551 kb on - strand at 1458.613 kb on + strand at 1458.725 kb on + strand at 1458.791 kb on + strand, within Shewana3_1244 at 1458.799 kb on - strand, within Shewana3_1244 at 1459.032 kb on + strand, within Shewana3_1244 at 1459.100 kb on + strand, within Shewana3_1244 at 1459.100 kb on + strand, within Shewana3_1244 at 1459.186 kb on + strand, within Shewana3_1244 at 1459.186 kb on + strand, within Shewana3_1244 at 1459.186 kb on + strand, within Shewana3_1244 at 1459.186 kb on + strand, within Shewana3_1244 at 1459.194 kb on - strand, within Shewana3_1244 at 1459.194 kb on - strand, within Shewana3_1244 at 1459.194 kb on - strand, within Shewana3_1244 at 1459.246 kb on - strand, within Shewana3_1244 at 1459.390 kb on + strand, within Shewana3_1244 at 1459.390 kb on + strand, within Shewana3_1244
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,457,310 + Shewana3_1242 0.16 -1.8 1,457,542 + Shewana3_1242 0.37 +1.3 1,457,640 + Shewana3_1242 0.45 -2.4 1,457,667 - Shewana3_1242 0.48 -0.5 1,457,701 + Shewana3_1242 0.51 -2.0 1,457,709 - Shewana3_1242 0.51 -1.8 1,457,738 + Shewana3_1242 0.54 -1.6 1,457,740 + Shewana3_1242 0.54 -0.5 1,457,843 + Shewana3_1242 0.63 -0.1 1,457,851 - Shewana3_1242 0.64 -0.1 1,457,916 + Shewana3_1242 0.69 -1.1 1,458,050 + Shewana3_1242 0.81 -2.9 1,458,179 + -0.9 1,458,365 + Shewana3_1243 0.71 -0.1 1,458,416 - -2.8 1,458,551 - +1.1 1,458,613 + +0.6 1,458,725 + -2.6 1,458,791 + Shewana3_1244 0.13 +1.0 1,458,799 - Shewana3_1244 0.14 +0.2 1,459,032 + Shewana3_1244 0.34 -0.2 1,459,100 + Shewana3_1244 0.39 -0.6 1,459,100 + Shewana3_1244 0.39 -0.0 1,459,186 + Shewana3_1244 0.46 -2.4 1,459,186 + Shewana3_1244 0.46 +0.3 1,459,186 + Shewana3_1244 0.46 +0.1 1,459,186 + Shewana3_1244 0.46 -0.3 1,459,194 - Shewana3_1244 0.47 +1.7 1,459,194 - Shewana3_1244 0.47 +1.5 1,459,194 - Shewana3_1244 0.47 +0.7 1,459,246 - Shewana3_1244 0.51 -0.0 1,459,390 + Shewana3_1244 0.63 -0.5 1,459,390 + Shewana3_1244 0.63 -1.2
Or see this region's nucleotide sequence