Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1153 and Shewana3_1154 are separated by 379 nucleotides Shewana3_1154 and Shewana3_1155 are separated by 55 nucleotides Shewana3_1155 and Shewana3_1156 are separated by 390 nucleotides
Shewana3_1153: Shewana3_1153 - putative signal transduction histidine kinase (RefSeq), at 1,359,708 to 1,360,868
_1153
Shewana3_1154: Shewana3_1154 - isochorismatase hydrolase (RefSeq), at 1,361,248 to 1,361,793
_1154
Shewana3_1155: Shewana3_1155 - hypothetical protein (RefSeq), at 1,361,849 to 1,362,571
_1155
Shewana3_1156: Shewana3_1156 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,362,962 to 1,364,533
_1156
Position (kb)
1361
1362
1363 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1360.851 kb on - strand at 1360.999 kb on + strand at 1361.181 kb on + strand at 1361.191 kb on + strand at 1361.307 kb on + strand, within Shewana3_1154 at 1361.315 kb on - strand, within Shewana3_1154 at 1361.429 kb on + strand, within Shewana3_1154 at 1361.700 kb on + strand, within Shewana3_1154 at 1361.708 kb on - strand, within Shewana3_1154 at 1361.735 kb on - strand, within Shewana3_1154 at 1361.889 kb on + strand at 1362.020 kb on - strand, within Shewana3_1155 at 1362.266 kb on - strand, within Shewana3_1155 at 1362.271 kb on + strand, within Shewana3_1155 at 1362.279 kb on - strand, within Shewana3_1155 at 1362.395 kb on + strand, within Shewana3_1155 at 1362.440 kb on + strand, within Shewana3_1155 at 1362.559 kb on - strand at 1362.712 kb on - strand at 1362.744 kb on - strand at 1362.773 kb on + strand at 1362.781 kb on - strand at 1362.931 kb on + strand at 1362.931 kb on + strand at 1362.939 kb on - strand at 1363.015 kb on - strand at 1363.045 kb on + strand at 1363.106 kb on + strand at 1363.229 kb on - strand, within Shewana3_1156 at 1363.313 kb on + strand, within Shewana3_1156 at 1363.523 kb on + strand, within Shewana3_1156 at 1363.523 kb on + strand, within Shewana3_1156
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,360,851 - +1.0 1,360,999 + -1.1 1,361,181 + -1.1 1,361,191 + -0.1 1,361,307 + Shewana3_1154 0.11 +1.0 1,361,315 - Shewana3_1154 0.12 +1.2 1,361,429 + Shewana3_1154 0.33 -1.0 1,361,700 + Shewana3_1154 0.83 +0.2 1,361,708 - Shewana3_1154 0.84 -0.4 1,361,735 - Shewana3_1154 0.89 -0.9 1,361,889 + +0.1 1,362,020 - Shewana3_1155 0.24 -2.4 1,362,266 - Shewana3_1155 0.58 -1.9 1,362,271 + Shewana3_1155 0.58 -0.3 1,362,279 - Shewana3_1155 0.59 -0.8 1,362,395 + Shewana3_1155 0.76 -0.9 1,362,440 + Shewana3_1155 0.82 -0.3 1,362,559 - -1.4 1,362,712 - +1.8 1,362,744 - -0.5 1,362,773 + +0.6 1,362,781 - +0.3 1,362,931 + -0.6 1,362,931 + +0.2 1,362,939 - -1.4 1,363,015 - +1.7 1,363,045 + +2.1 1,363,106 + -0.5 1,363,229 - Shewana3_1156 0.17 +1.1 1,363,313 + Shewana3_1156 0.22 +1.4 1,363,523 + Shewana3_1156 0.36 -2.3 1,363,523 + Shewana3_1156 0.36 +0.3
Or see this region's nucleotide sequence