Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1076

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1074 and Shewana3_1075 are separated by 203 nucleotidesShewana3_1075 and Shewana3_1076 are separated by 88 nucleotidesShewana3_1076 and Shewana3_1077 are separated by 359 nucleotides Shewana3_1074: Shewana3_1074 - extracellular solute-binding protein (RefSeq), at 1,259,924 to 1,260,742 _1074 Shewana3_1075: Shewana3_1075 - OsmC family protein (RefSeq), at 1,260,946 to 1,261,374 _1075 Shewana3_1076: Shewana3_1076 - TetR family transcriptional regulator (RefSeq), at 1,261,463 to 1,262,083 _1076 Shewana3_1077: Shewana3_1077 - RND family efflux transporter MFP subunit (RefSeq), at 1,262,443 to 1,263,681 _1077 Position (kb) 1261 1262 1263Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1260.530 kb on + strand, within Shewana3_1074at 1260.600 kb on + strand, within Shewana3_1074at 1260.601 kb on - strand, within Shewana3_1074at 1261.033 kb on + strand, within Shewana3_1075at 1261.167 kb on + strand, within Shewana3_1075at 1261.175 kb on - strand, within Shewana3_1075at 1261.264 kb on + strand, within Shewana3_1075at 1261.346 kb on + strandat 1261.346 kb on + strandat 1261.398 kb on + strandat 1261.567 kb on - strand, within Shewana3_1076at 1261.652 kb on - strand, within Shewana3_1076at 1261.796 kb on - strand, within Shewana3_1076at 1261.949 kb on - strand, within Shewana3_1076at 1261.959 kb on - strand, within Shewana3_1076at 1261.999 kb on - strand, within Shewana3_1076at 1262.455 kb on - strandat 1262.512 kb on + strandat 1262.556 kb on + strandat 1262.561 kb on + strandat 1262.579 kb on - strand, within Shewana3_1077at 1262.713 kb on + strand, within Shewana3_1077at 1262.757 kb on - strand, within Shewana3_1077at 1262.784 kb on + strand, within Shewana3_1077at 1262.789 kb on + strand, within Shewana3_1077at 1262.822 kb on - strand, within Shewana3_1077at 1263.040 kb on + strand, within Shewana3_1077at 1263.040 kb on + strand, within Shewana3_1077at 1263.040 kb on + strand, within Shewana3_1077at 1263.048 kb on - strand, within Shewana3_1077at 1263.048 kb on - strand, within Shewana3_1077at 1263.048 kb on - strand, within Shewana3_1077at 1263.058 kb on - strand, within Shewana3_1077

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
1,260,530 + Shewana3_1074 0.74 +0.6
1,260,600 + Shewana3_1074 0.83 +0.2
1,260,601 - Shewana3_1074 0.83 -0.6
1,261,033 + Shewana3_1075 0.20 -0.5
1,261,167 + Shewana3_1075 0.52 -0.0
1,261,175 - Shewana3_1075 0.53 +1.1
1,261,264 + Shewana3_1075 0.74 -0.4
1,261,346 + -1.1
1,261,346 + -0.1
1,261,398 + +0.7
1,261,567 - Shewana3_1076 0.17 +3.4
1,261,652 - Shewana3_1076 0.30 +3.5
1,261,796 - Shewana3_1076 0.54 +2.0
1,261,949 - Shewana3_1076 0.78 +3.2
1,261,959 - Shewana3_1076 0.80 +4.4
1,261,999 - Shewana3_1076 0.86 +2.4
1,262,455 - -0.1
1,262,512 + -0.6
1,262,556 + -0.8
1,262,561 + -0.4
1,262,579 - Shewana3_1077 0.11 -1.4
1,262,713 + Shewana3_1077 0.22 +0.4
1,262,757 - Shewana3_1077 0.25 -0.0
1,262,784 + Shewana3_1077 0.28 -3.4
1,262,789 + Shewana3_1077 0.28 -0.6
1,262,822 - Shewana3_1077 0.31 -1.8
1,263,040 + Shewana3_1077 0.48 -0.1
1,263,040 + Shewana3_1077 0.48 -0.0
1,263,040 + Shewana3_1077 0.48 -0.3
1,263,048 - Shewana3_1077 0.49 -1.2
1,263,048 - Shewana3_1077 0.49 +1.1
1,263,048 - Shewana3_1077 0.49 +1.0
1,263,058 - Shewana3_1077 0.50 +1.0

Or see this region's nucleotide sequence