Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1074 and Shewana3_1075 are separated by 203 nucleotides Shewana3_1075 and Shewana3_1076 are separated by 88 nucleotides Shewana3_1076 and Shewana3_1077 are separated by 359 nucleotides
Shewana3_1074: Shewana3_1074 - extracellular solute-binding protein (RefSeq), at 1,259,924 to 1,260,742
_1074
Shewana3_1075: Shewana3_1075 - OsmC family protein (RefSeq), at 1,260,946 to 1,261,374
_1075
Shewana3_1076: Shewana3_1076 - TetR family transcriptional regulator (RefSeq), at 1,261,463 to 1,262,083
_1076
Shewana3_1077: Shewana3_1077 - RND family efflux transporter MFP subunit (RefSeq), at 1,262,443 to 1,263,681
_1077
Position (kb)
1261
1262
1263 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1260.530 kb on + strand, within Shewana3_1074 at 1260.600 kb on + strand, within Shewana3_1074 at 1260.601 kb on - strand, within Shewana3_1074 at 1261.033 kb on + strand, within Shewana3_1075 at 1261.167 kb on + strand, within Shewana3_1075 at 1261.175 kb on - strand, within Shewana3_1075 at 1261.264 kb on + strand, within Shewana3_1075 at 1261.346 kb on + strand at 1261.346 kb on + strand at 1261.398 kb on + strand at 1261.567 kb on - strand, within Shewana3_1076 at 1261.652 kb on - strand, within Shewana3_1076 at 1261.796 kb on - strand, within Shewana3_1076 at 1261.949 kb on - strand, within Shewana3_1076 at 1261.959 kb on - strand, within Shewana3_1076 at 1261.999 kb on - strand, within Shewana3_1076 at 1262.455 kb on - strand at 1262.512 kb on + strand at 1262.556 kb on + strand at 1262.561 kb on + strand at 1262.579 kb on - strand, within Shewana3_1077 at 1262.713 kb on + strand, within Shewana3_1077 at 1262.757 kb on - strand, within Shewana3_1077 at 1262.784 kb on + strand, within Shewana3_1077 at 1262.789 kb on + strand, within Shewana3_1077 at 1262.822 kb on - strand, within Shewana3_1077 at 1263.040 kb on + strand, within Shewana3_1077 at 1263.040 kb on + strand, within Shewana3_1077 at 1263.040 kb on + strand, within Shewana3_1077 at 1263.048 kb on - strand, within Shewana3_1077 at 1263.048 kb on - strand, within Shewana3_1077 at 1263.048 kb on - strand, within Shewana3_1077 at 1263.058 kb on - strand, within Shewana3_1077
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,260,530 + Shewana3_1074 0.74 +0.6 1,260,600 + Shewana3_1074 0.83 +0.2 1,260,601 - Shewana3_1074 0.83 -0.6 1,261,033 + Shewana3_1075 0.20 -0.5 1,261,167 + Shewana3_1075 0.52 -0.0 1,261,175 - Shewana3_1075 0.53 +1.1 1,261,264 + Shewana3_1075 0.74 -0.4 1,261,346 + -1.1 1,261,346 + -0.1 1,261,398 + +0.7 1,261,567 - Shewana3_1076 0.17 +3.4 1,261,652 - Shewana3_1076 0.30 +3.5 1,261,796 - Shewana3_1076 0.54 +2.0 1,261,949 - Shewana3_1076 0.78 +3.2 1,261,959 - Shewana3_1076 0.80 +4.4 1,261,999 - Shewana3_1076 0.86 +2.4 1,262,455 - -0.1 1,262,512 + -0.6 1,262,556 + -0.8 1,262,561 + -0.4 1,262,579 - Shewana3_1077 0.11 -1.4 1,262,713 + Shewana3_1077 0.22 +0.4 1,262,757 - Shewana3_1077 0.25 -0.0 1,262,784 + Shewana3_1077 0.28 -3.4 1,262,789 + Shewana3_1077 0.28 -0.6 1,262,822 - Shewana3_1077 0.31 -1.8 1,263,040 + Shewana3_1077 0.48 -0.1 1,263,040 + Shewana3_1077 0.48 -0.0 1,263,040 + Shewana3_1077 0.48 -0.3 1,263,048 - Shewana3_1077 0.49 -1.2 1,263,048 - Shewana3_1077 0.49 +1.1 1,263,048 - Shewana3_1077 0.49 +1.0 1,263,058 - Shewana3_1077 0.50 +1.0
Or see this region's nucleotide sequence