Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0803 and Shewana3_0804 are separated by 145 nucleotides Shewana3_0804 and Shewana3_0805 are separated by 24 nucleotides Shewana3_0805 and Shewana3_0806 are separated by 57 nucleotides
Shewana3_0803: Shewana3_0803 - MORN repeat-containing protein (RefSeq), at 926,008 to 928,281
_0803
Shewana3_0804: Shewana3_0804 - cupin 2 domain-containing protein (RefSeq), at 928,427 to 928,750
_0804
Shewana3_0805: Shewana3_0805 - hypothetical protein (RefSeq), at 928,775 to 929,947
_0805
Shewana3_0806: Shewana3_0806 - peptidase M19, renal dipeptidase (RefSeq), at 930,005 to 931,168
_0806
Position (kb) 928
929
930 Strain fitness (log2 ratio) -2
-1
0
1
2 at 927.814 kb on + strand, within Shewana3_0803 at 927.822 kb on - strand, within Shewana3_0803 at 927.831 kb on - strand, within Shewana3_0803 at 927.903 kb on - strand, within Shewana3_0803 at 927.903 kb on - strand, within Shewana3_0803 at 928.019 kb on + strand, within Shewana3_0803 at 928.019 kb on + strand, within Shewana3_0803 at 928.027 kb on - strand, within Shewana3_0803 at 928.027 kb on - strand, within Shewana3_0803 at 928.095 kb on - strand at 928.177 kb on - strand at 928.198 kb on + strand at 928.208 kb on + strand at 928.504 kb on + strand, within Shewana3_0804 at 928.512 kb on - strand, within Shewana3_0804 at 928.646 kb on - strand, within Shewana3_0804 at 928.646 kb on - strand, within Shewana3_0804 at 928.670 kb on - strand, within Shewana3_0804 at 928.694 kb on - strand, within Shewana3_0804 at 928.716 kb on - strand, within Shewana3_0804 at 928.920 kb on + strand, within Shewana3_0805 at 929.029 kb on + strand, within Shewana3_0805 at 929.066 kb on + strand, within Shewana3_0805 at 929.386 kb on + strand, within Shewana3_0805 at 929.386 kb on + strand, within Shewana3_0805 at 929.891 kb on + strand at 929.891 kb on + strand at 929.891 kb on + strand at 929.899 kb on - strand at 929.950 kb on - strand at 930.070 kb on + strand at 930.078 kb on - strand at 930.080 kb on + strand at 930.184 kb on + strand, within Shewana3_0806 at 930.444 kb on + strand, within Shewana3_0806 at 930.488 kb on + strand, within Shewana3_0806
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 927,814 + Shewana3_0803 0.79 -0.8 927,822 - Shewana3_0803 0.80 +0.4 927,831 - Shewana3_0803 0.80 -0.5 927,903 - Shewana3_0803 0.83 -0.2 927,903 - Shewana3_0803 0.83 +1.6 928,019 + Shewana3_0803 0.88 -0.9 928,019 + Shewana3_0803 0.88 -0.7 928,027 - Shewana3_0803 0.89 -0.4 928,027 - Shewana3_0803 0.89 +1.2 928,095 - +1.3 928,177 - -2.5 928,198 + +0.6 928,208 + +0.0 928,504 + Shewana3_0804 0.24 +0.1 928,512 - Shewana3_0804 0.26 -0.5 928,646 - Shewana3_0804 0.68 -0.0 928,646 - Shewana3_0804 0.68 -0.2 928,670 - Shewana3_0804 0.75 +2.1 928,694 - Shewana3_0804 0.82 +0.9 928,716 - Shewana3_0804 0.89 -0.1 928,920 + Shewana3_0805 0.12 +1.7 929,029 + Shewana3_0805 0.22 +1.7 929,066 + Shewana3_0805 0.25 +1.6 929,386 + Shewana3_0805 0.52 -1.3 929,386 + Shewana3_0805 0.52 -0.9 929,891 + -0.4 929,891 + -1.2 929,891 + +0.7 929,899 - +1.7 929,950 - +2.1 930,070 + -1.1 930,078 - -0.8 930,080 + +0.2 930,184 + Shewana3_0806 0.15 -0.2 930,444 + Shewana3_0806 0.38 +0.1 930,488 + Shewana3_0806 0.41 -0.0
Or see this region's nucleotide sequence