Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0674

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0672 and Shewana3_0673 are separated by 105 nucleotidesShewana3_0673 and Shewana3_0674 overlap by 4 nucleotidesShewana3_0674 and Shewana3_0675 overlap by 14 nucleotidesShewana3_0675 and Shewana3_0676 overlap by 4 nucleotides Shewana3_0672: Shewana3_0672 - RNA polymerase factor sigma-54 (RefSeq), at 791,964 to 793,439 _0672 Shewana3_0673: Shewana3_0673 - ABC transporter related (RefSeq), at 793,545 to 794,276 _0673 Shewana3_0674: Shewana3_0674 - OstA family protein (RefSeq), at 794,273 to 794,824 _0674 Shewana3_0675: Shewana3_0675 - hypothetical protein (RefSeq), at 794,811 to 795,371 _0675 Shewana3_0676: Shewana3_0676 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq), at 795,368 to 795,919 _0676 Position (kb) 794 795Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 793.322 kb on - strandat 793.415 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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793,322 - -6.0
793,415 + -1.4

Or see this region's nucleotide sequence