Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0654 and Shewana3_0655 are separated by 168 nucleotides Shewana3_0655 and Shewana3_0656 are separated by 88 nucleotides Shewana3_0656 and Shewana3_0657 overlap by 8 nucleotides
Shewana3_0654: Shewana3_0654 - Mg2 transporter protein, CorA family protein (RefSeq), at 774,044 to 775,021
_0654
Shewana3_0655: Shewana3_0655 - hypothetical protein (RefSeq), at 775,190 to 775,564
_0655
Shewana3_0656: Shewana3_0656 - two component LuxR family transcriptional regulator (RefSeq), at 775,653 to 776,282
_0656
Shewana3_0657: Shewana3_0657 - nitrate/nitrite sensor protein NarQ (RefSeq), at 776,275 to 778,071
_0657
Position (kb)
775
776
777 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 774.743 kb on - strand, within Shewana3_0654 at 774.758 kb on + strand, within Shewana3_0654 at 774.854 kb on + strand, within Shewana3_0654 at 774.948 kb on - strand at 774.948 kb on - strand at 774.955 kb on - strand at 774.979 kb on + strand at 774.982 kb on - strand at 774.987 kb on - strand at 775.102 kb on + strand at 775.207 kb on + strand at 775.237 kb on - strand, within Shewana3_0655 at 775.239 kb on + strand, within Shewana3_0655 at 775.262 kb on - strand, within Shewana3_0655 at 775.273 kb on - strand, within Shewana3_0655 at 775.386 kb on + strand, within Shewana3_0655 at 775.537 kb on + strand at 775.537 kb on + strand at 775.758 kb on - strand, within Shewana3_0656 at 776.031 kb on + strand, within Shewana3_0656 at 776.079 kb on - strand, within Shewana3_0656 at 776.079 kb on - strand, within Shewana3_0656 at 776.120 kb on + strand, within Shewana3_0656 at 776.168 kb on - strand, within Shewana3_0656 at 776.224 kb on - strand at 776.266 kb on + strand at 776.274 kb on - strand at 776.383 kb on + strand at 776.390 kb on - strand at 776.499 kb on - strand, within Shewana3_0657 at 776.553 kb on - strand, within Shewana3_0657 at 776.622 kb on + strand, within Shewana3_0657 at 776.629 kb on - strand, within Shewana3_0657 at 776.675 kb on - strand, within Shewana3_0657 at 776.723 kb on + strand, within Shewana3_0657 at 776.723 kb on + strand, within Shewana3_0657 at 776.723 kb on + strand, within Shewana3_0657 at 776.795 kb on + strand, within Shewana3_0657 at 776.811 kb on + strand, within Shewana3_0657 at 776.825 kb on + strand, within Shewana3_0657 at 777.131 kb on - strand, within Shewana3_0657 at 777.170 kb on - strand, within Shewana3_0657 at 777.192 kb on + strand, within Shewana3_0657 at 777.200 kb on - strand, within Shewana3_0657
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 774,743 - Shewana3_0654 0.71 +1.1 774,758 + Shewana3_0654 0.73 +0.7 774,854 + Shewana3_0654 0.83 -0.1 774,948 - -0.5 774,948 - +0.5 774,955 - +0.5 774,979 + -0.1 774,982 - +0.3 774,987 - -0.5 775,102 + -3.4 775,207 + -0.0 775,237 - Shewana3_0655 0.13 +1.3 775,239 + Shewana3_0655 0.13 -0.1 775,262 - Shewana3_0655 0.19 +0.2 775,273 - Shewana3_0655 0.22 -0.5 775,386 + Shewana3_0655 0.52 -0.7 775,537 + +0.2 775,537 + +0.1 775,758 - Shewana3_0656 0.17 -1.1 776,031 + Shewana3_0656 0.60 -1.7 776,079 - Shewana3_0656 0.68 -1.5 776,079 - Shewana3_0656 0.68 -0.7 776,120 + Shewana3_0656 0.74 -0.4 776,168 - Shewana3_0656 0.82 +0.6 776,224 - -0.1 776,266 + +0.2 776,274 - -2.8 776,383 + -0.4 776,390 - +0.2 776,499 - Shewana3_0657 0.12 +0.2 776,553 - Shewana3_0657 0.15 -0.7 776,622 + Shewana3_0657 0.19 +0.5 776,629 - Shewana3_0657 0.20 -1.2 776,675 - Shewana3_0657 0.22 -0.5 776,723 + Shewana3_0657 0.25 -0.2 776,723 + Shewana3_0657 0.25 -1.0 776,723 + Shewana3_0657 0.25 -0.8 776,795 + Shewana3_0657 0.29 -1.4 776,811 + Shewana3_0657 0.30 -1.3 776,825 + Shewana3_0657 0.31 +2.5 777,131 - Shewana3_0657 0.48 -2.7 777,170 - Shewana3_0657 0.50 -0.3 777,192 + Shewana3_0657 0.51 -3.4 777,200 - Shewana3_0657 0.51 -0.5
Or see this region's nucleotide sequence