Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0656

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0654 and Shewana3_0655 are separated by 168 nucleotidesShewana3_0655 and Shewana3_0656 are separated by 88 nucleotidesShewana3_0656 and Shewana3_0657 overlap by 8 nucleotides Shewana3_0654: Shewana3_0654 - Mg2 transporter protein, CorA family protein (RefSeq), at 774,044 to 775,021 _0654 Shewana3_0655: Shewana3_0655 - hypothetical protein (RefSeq), at 775,190 to 775,564 _0655 Shewana3_0656: Shewana3_0656 - two component LuxR family transcriptional regulator (RefSeq), at 775,653 to 776,282 _0656 Shewana3_0657: Shewana3_0657 - nitrate/nitrite sensor protein NarQ (RefSeq), at 776,275 to 778,071 _0657 Position (kb) 775 776 777Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 774.743 kb on - strand, within Shewana3_0654at 774.758 kb on + strand, within Shewana3_0654at 774.854 kb on + strand, within Shewana3_0654at 774.948 kb on - strandat 774.948 kb on - strandat 774.955 kb on - strandat 774.979 kb on + strandat 774.982 kb on - strandat 774.987 kb on - strandat 775.102 kb on + strandat 775.207 kb on + strandat 775.237 kb on - strand, within Shewana3_0655at 775.239 kb on + strand, within Shewana3_0655at 775.262 kb on - strand, within Shewana3_0655at 775.273 kb on - strand, within Shewana3_0655at 775.386 kb on + strand, within Shewana3_0655at 775.537 kb on + strandat 775.537 kb on + strandat 775.758 kb on - strand, within Shewana3_0656at 776.031 kb on + strand, within Shewana3_0656at 776.079 kb on - strand, within Shewana3_0656at 776.079 kb on - strand, within Shewana3_0656at 776.120 kb on + strand, within Shewana3_0656at 776.168 kb on - strand, within Shewana3_0656at 776.224 kb on - strandat 776.266 kb on + strandat 776.274 kb on - strandat 776.383 kb on + strandat 776.390 kb on - strandat 776.499 kb on - strand, within Shewana3_0657at 776.553 kb on - strand, within Shewana3_0657at 776.622 kb on + strand, within Shewana3_0657at 776.629 kb on - strand, within Shewana3_0657at 776.675 kb on - strand, within Shewana3_0657at 776.723 kb on + strand, within Shewana3_0657at 776.723 kb on + strand, within Shewana3_0657at 776.723 kb on + strand, within Shewana3_0657at 776.795 kb on + strand, within Shewana3_0657at 776.811 kb on + strand, within Shewana3_0657at 776.825 kb on + strand, within Shewana3_0657at 777.131 kb on - strand, within Shewana3_0657at 777.170 kb on - strand, within Shewana3_0657at 777.192 kb on + strand, within Shewana3_0657at 777.200 kb on - strand, within Shewana3_0657

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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774,743 - Shewana3_0654 0.71 +1.1
774,758 + Shewana3_0654 0.73 +0.7
774,854 + Shewana3_0654 0.83 -0.1
774,948 - -0.5
774,948 - +0.5
774,955 - +0.5
774,979 + -0.1
774,982 - +0.3
774,987 - -0.5
775,102 + -3.4
775,207 + -0.0
775,237 - Shewana3_0655 0.13 +1.3
775,239 + Shewana3_0655 0.13 -0.1
775,262 - Shewana3_0655 0.19 +0.2
775,273 - Shewana3_0655 0.22 -0.5
775,386 + Shewana3_0655 0.52 -0.7
775,537 + +0.2
775,537 + +0.1
775,758 - Shewana3_0656 0.17 -1.1
776,031 + Shewana3_0656 0.60 -1.7
776,079 - Shewana3_0656 0.68 -1.5
776,079 - Shewana3_0656 0.68 -0.7
776,120 + Shewana3_0656 0.74 -0.4
776,168 - Shewana3_0656 0.82 +0.6
776,224 - -0.1
776,266 + +0.2
776,274 - -2.8
776,383 + -0.4
776,390 - +0.2
776,499 - Shewana3_0657 0.12 +0.2
776,553 - Shewana3_0657 0.15 -0.7
776,622 + Shewana3_0657 0.19 +0.5
776,629 - Shewana3_0657 0.20 -1.2
776,675 - Shewana3_0657 0.22 -0.5
776,723 + Shewana3_0657 0.25 -0.2
776,723 + Shewana3_0657 0.25 -1.0
776,723 + Shewana3_0657 0.25 -0.8
776,795 + Shewana3_0657 0.29 -1.4
776,811 + Shewana3_0657 0.30 -1.3
776,825 + Shewana3_0657 0.31 +2.5
777,131 - Shewana3_0657 0.48 -2.7
777,170 - Shewana3_0657 0.50 -0.3
777,192 + Shewana3_0657 0.51 -3.4
777,200 - Shewana3_0657 0.51 -0.5

Or see this region's nucleotide sequence