Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0593

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0592 and Shewana3_0593 are separated by 79 nucleotidesShewana3_0593 and Shewana3_0594 are separated by 8 nucleotides Shewana3_0592: Shewana3_0592 - carbohydrate kinase, YjeF related protein (RefSeq), at 694,463 to 695,962 _0592 Shewana3_0593: Shewana3_0593 - hypothetical protein (RefSeq), at 696,042 to 696,500 _0593 Shewana3_0594: Shewana3_0594 - cell wall hydrolase/autolysin (RefSeq), at 696,509 to 697,900 _0594 Position (kb) 696 697Strain fitness (log2 ratio) -1 0 1at 695.217 kb on + strand, within Shewana3_0592at 695.280 kb on + strand, within Shewana3_0592at 695.314 kb on + strand, within Shewana3_0592at 695.381 kb on - strand, within Shewana3_0592at 695.473 kb on + strand, within Shewana3_0592at 695.509 kb on + strand, within Shewana3_0592

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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695,217 + Shewana3_0592 0.50 +0.2
695,280 + Shewana3_0592 0.54 -0.5
695,314 + Shewana3_0592 0.57 -0.1
695,381 - Shewana3_0592 0.61 -0.6
695,473 + Shewana3_0592 0.67 -1.2
695,509 + Shewana3_0592 0.70 -1.1

Or see this region's nucleotide sequence