Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0465

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0464 and Shewana3_0465 are separated by 655 nucleotidesShewana3_0465 and Shewana3_0466 are separated by 78 nucleotides Shewana3_0464: Shewana3_0464 - hypothetical protein (RefSeq), at 538,433 to 538,771 _0464 Shewana3_0465: Shewana3_0465 - hypothetical protein (RefSeq), at 539,427 to 540,026 _0465 Shewana3_0466: Shewana3_0466 - no description, at 540,105 to 540,392 _0466 Position (kb) 539 540 541Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 538.505 kb on + strand, within Shewana3_0464at 538.530 kb on + strand, within Shewana3_0464at 538.530 kb on + strand, within Shewana3_0464at 538.530 kb on + strand, within Shewana3_0464at 538.530 kb on + strand, within Shewana3_0464at 538.530 kb on + strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.572 kb on + strand, within Shewana3_0464at 538.572 kb on - strand, within Shewana3_0464at 538.578 kb on + strand, within Shewana3_0464at 538.647 kb on + strand, within Shewana3_0464at 538.807 kb on + strandat 538.863 kb on - strandat 538.978 kb on + strandat 538.995 kb on + strandat 539.043 kb on + strandat 539.043 kb on + strandat 539.043 kb on + strandat 539.043 kb on + strandat 539.043 kb on + strandat 539.044 kb on + strandat 539.052 kb on - strandat 539.052 kb on - strandat 539.119 kb on - strandat 539.318 kb on + strandat 539.416 kb on - strandat 539.437 kb on - strandat 539.438 kb on - strandat 539.440 kb on + strandat 539.440 kb on + strandat 539.464 kb on - strandat 539.497 kb on + strand, within Shewana3_0465at 539.497 kb on + strand, within Shewana3_0465at 539.505 kb on - strand, within Shewana3_0465at 539.507 kb on + strand, within Shewana3_0465at 539.616 kb on - strand, within Shewana3_0465at 539.618 kb on + strand, within Shewana3_0465at 539.640 kb on - strand, within Shewana3_0465at 539.640 kb on - strand, within Shewana3_0465at 539.640 kb on - strand, within Shewana3_0465at 539.650 kb on + strand, within Shewana3_0465at 539.652 kb on + strand, within Shewana3_0465at 539.660 kb on - strand, within Shewana3_0465at 539.676 kb on + strand, within Shewana3_0465at 539.759 kb on - strand, within Shewana3_0465at 539.805 kb on + strand, within Shewana3_0465at 539.805 kb on + strand, within Shewana3_0465at 539.813 kb on - strand, within Shewana3_0465at 539.813 kb on - strand, within Shewana3_0465at 539.838 kb on + strand, within Shewana3_0465at 539.838 kb on + strand, within Shewana3_0465at 539.846 kb on - strand, within Shewana3_0465at 539.846 kb on - strand, within Shewana3_0465at 539.847 kb on - strand, within Shewana3_0465at 539.847 kb on - strand, within Shewana3_0465at 539.927 kb on - strand, within Shewana3_0465at 539.931 kb on + strand, within Shewana3_0465at 539.944 kb on - strand, within Shewana3_0465at 539.949 kb on - strand, within Shewana3_0465at 539.949 kb on - strand, within Shewana3_0465at 539.949 kb on - strand, within Shewana3_0465at 539.972 kb on - strandat 539.972 kb on - strandat 540.024 kb on + strandat 540.024 kb on + strandat 540.129 kb on + strandat 540.158 kb on - strand, within Shewana3_0466at 540.160 kb on + strand, within Shewana3_0466at 540.378 kb on + strandat 540.705 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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538,505 + Shewana3_0464 0.21 -0.3
538,530 + Shewana3_0464 0.29 -0.0
538,530 + Shewana3_0464 0.29 +1.6
538,530 + Shewana3_0464 0.29 -1.1
538,530 + Shewana3_0464 0.29 -0.0
538,530 + Shewana3_0464 0.29 +0.0
538,538 - Shewana3_0464 0.31 -2.4
538,538 - Shewana3_0464 0.31 -0.8
538,538 - Shewana3_0464 0.31 +0.4
538,538 - Shewana3_0464 0.31 +0.3
538,538 - Shewana3_0464 0.31 -1.8
538,538 - Shewana3_0464 0.31 -1.6
538,572 + Shewana3_0464 0.41 -0.4
538,572 - Shewana3_0464 0.41 -3.5
538,578 + Shewana3_0464 0.43 -1.0
538,647 + Shewana3_0464 0.63 +0.1
538,807 + +0.1
538,863 - +1.3
538,978 + -0.2
538,995 + -0.8
539,043 + +1.8
539,043 + -0.4
539,043 + +0.5
539,043 + +0.7
539,043 + +2.7
539,044 + +0.7
539,052 - -0.9
539,052 - -0.8
539,119 - -1.2
539,318 + +0.0
539,416 - +0.8
539,437 - +0.5
539,438 - +0.7
539,440 + +0.7
539,440 + +0.2
539,464 - -0.7
539,497 + Shewana3_0465 0.12 +0.5
539,497 + Shewana3_0465 0.12 +1.2
539,505 - Shewana3_0465 0.13 +2.7
539,507 + Shewana3_0465 0.13 -1.4
539,616 - Shewana3_0465 0.32 -1.6
539,618 + Shewana3_0465 0.32 -0.2
539,640 - Shewana3_0465 0.35 +1.1
539,640 - Shewana3_0465 0.35 -1.2
539,640 - Shewana3_0465 0.35 +0.3
539,650 + Shewana3_0465 0.37 +0.6
539,652 + Shewana3_0465 0.38 +0.7
539,660 - Shewana3_0465 0.39 +0.1
539,676 + Shewana3_0465 0.41 -0.1
539,759 - Shewana3_0465 0.55 +1.1
539,805 + Shewana3_0465 0.63 -0.1
539,805 + Shewana3_0465 0.63 -1.1
539,813 - Shewana3_0465 0.64 +2.5
539,813 - Shewana3_0465 0.64 +0.9
539,838 + Shewana3_0465 0.69 +0.3
539,838 + Shewana3_0465 0.69 +0.7
539,846 - Shewana3_0465 0.70 -1.7
539,846 - Shewana3_0465 0.70 -2.5
539,847 - Shewana3_0465 0.70 -0.7
539,847 - Shewana3_0465 0.70 -0.7
539,927 - Shewana3_0465 0.83 +0.1
539,931 + Shewana3_0465 0.84 -1.1
539,944 - Shewana3_0465 0.86 -0.9
539,949 - Shewana3_0465 0.87 -0.0
539,949 - Shewana3_0465 0.87 +1.1
539,949 - Shewana3_0465 0.87 -0.1
539,972 - +1.4
539,972 - +1.1
540,024 + +0.1
540,024 + -2.4
540,129 + -0.7
540,158 - Shewana3_0466 0.18 -2.0
540,160 + Shewana3_0466 0.19 +1.4
540,378 + +1.4
540,705 + -0.2

Or see this region's nucleotide sequence