Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0462

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0459 and Shewana3_0460 are separated by 193 nucleotidesShewana3_0460 and Shewana3_0461 are separated by 11 nucleotidesShewana3_0461 and Shewana3_0462 are separated by 47 nucleotidesShewana3_0462 and Shewana3_0463 are separated by 30 nucleotidesShewana3_0463 and Shewana3_0464 are separated by 291 nucleotides Shewana3_0459: Shewana3_0459 - protein of unknown function DUF853, NPT hydrolase putative (RefSeq), at 534,420 to 535,913 _0459 Shewana3_0460: Shewana3_0460 - hypothetical protein (RefSeq), at 536,107 to 536,340 _0460 Shewana3_0461: Shewana3_0461 - hypothetical protein (RefSeq), at 536,352 to 536,777 _0461 Shewana3_0462: Shewana3_0462 - protein of unknown function, zinc metallopeptidase putative (RefSeq), at 536,825 to 537,703 _0462 Shewana3_0463: Shewana3_0463 - NUDIX hydrolase (RefSeq), at 537,734 to 538,141 _0463 Shewana3_0464: Shewana3_0464 - hypothetical protein (RefSeq), at 538,433 to 538,771 _0464 Position (kb) 536 537 538Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 535.907 kb on - strandat 535.961 kb on + strandat 535.969 kb on - strandat 535.969 kb on - strandat 536.050 kb on - strandat 536.051 kb on - strandat 536.056 kb on - strandat 536.154 kb on - strand, within Shewana3_0460at 536.245 kb on + strand, within Shewana3_0460at 536.253 kb on - strand, within Shewana3_0460at 536.253 kb on - strand, within Shewana3_0460at 536.316 kb on - strand, within Shewana3_0460at 536.351 kb on + strandat 536.375 kb on + strandat 536.414 kb on - strand, within Shewana3_0461at 536.813 kb on - strandat 536.881 kb on + strandat 536.881 kb on - strandat 537.015 kb on + strand, within Shewana3_0462at 537.015 kb on + strand, within Shewana3_0462at 537.207 kb on + strand, within Shewana3_0462at 537.240 kb on + strand, within Shewana3_0462at 537.356 kb on + strand, within Shewana3_0462at 537.386 kb on - strand, within Shewana3_0462at 537.508 kb on + strand, within Shewana3_0462at 537.516 kb on - strand, within Shewana3_0462at 537.601 kb on - strand, within Shewana3_0462at 537.606 kb on + strand, within Shewana3_0462at 537.607 kb on - strand, within Shewana3_0462at 537.721 kb on - strandat 537.765 kb on + strandat 537.805 kb on + strand, within Shewana3_0463at 537.805 kb on + strand, within Shewana3_0463at 537.805 kb on + strand, within Shewana3_0463at 537.852 kb on + strand, within Shewana3_0463at 538.026 kb on + strand, within Shewana3_0463at 538.034 kb on - strand, within Shewana3_0463at 538.065 kb on + strand, within Shewana3_0463at 538.065 kb on + strand, within Shewana3_0463at 538.073 kb on - strand, within Shewana3_0463at 538.073 kb on - strand, within Shewana3_0463at 538.143 kb on - strandat 538.173 kb on + strandat 538.233 kb on + strandat 538.233 kb on + strandat 538.233 kb on + strandat 538.242 kb on - strandat 538.326 kb on + strandat 538.505 kb on + strand, within Shewana3_0464at 538.530 kb on + strand, within Shewana3_0464at 538.530 kb on + strand, within Shewana3_0464at 538.530 kb on + strand, within Shewana3_0464at 538.530 kb on + strand, within Shewana3_0464at 538.530 kb on + strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.538 kb on - strand, within Shewana3_0464at 538.572 kb on + strand, within Shewana3_0464at 538.572 kb on - strand, within Shewana3_0464at 538.578 kb on + strand, within Shewana3_0464at 538.647 kb on + strand, within Shewana3_0464

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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535,907 - -0.1
535,961 + -1.4
535,969 - -1.2
535,969 - -0.8
536,050 - -0.7
536,051 - +0.1
536,056 - -1.3
536,154 - Shewana3_0460 0.20 +0.4
536,245 + Shewana3_0460 0.59 +0.7
536,253 - Shewana3_0460 0.62 +1.0
536,253 - Shewana3_0460 0.62 +0.0
536,316 - Shewana3_0460 0.89 -0.6
536,351 + +0.3
536,375 + +0.8
536,414 - Shewana3_0461 0.15 +1.5
536,813 - +0.4
536,881 + +0.0
536,881 - +0.2
537,015 + Shewana3_0462 0.22 -0.5
537,015 + Shewana3_0462 0.22 +1.0
537,207 + Shewana3_0462 0.43 -0.1
537,240 + Shewana3_0462 0.47 -0.1
537,356 + Shewana3_0462 0.60 +2.4
537,386 - Shewana3_0462 0.64 -0.1
537,508 + Shewana3_0462 0.78 +2.3
537,516 - Shewana3_0462 0.79 -0.4
537,601 - Shewana3_0462 0.88 -0.0
537,606 + Shewana3_0462 0.89 +0.1
537,607 - Shewana3_0462 0.89 +0.8
537,721 - -0.2
537,765 + -0.2
537,805 + Shewana3_0463 0.17 +1.4
537,805 + Shewana3_0463 0.17 +0.6
537,805 + Shewana3_0463 0.17 +1.1
537,852 + Shewana3_0463 0.29 -0.4
538,026 + Shewana3_0463 0.72 -0.2
538,034 - Shewana3_0463 0.74 +0.8
538,065 + Shewana3_0463 0.81 +1.5
538,065 + Shewana3_0463 0.81 -0.0
538,073 - Shewana3_0463 0.83 +0.3
538,073 - Shewana3_0463 0.83 -0.0
538,143 - -1.9
538,173 + -4.2
538,233 + +0.4
538,233 + -0.8
538,233 + +1.0
538,242 - -0.4
538,326 + -1.2
538,505 + Shewana3_0464 0.21 -0.3
538,530 + Shewana3_0464 0.29 -0.0
538,530 + Shewana3_0464 0.29 +1.6
538,530 + Shewana3_0464 0.29 -1.1
538,530 + Shewana3_0464 0.29 -0.0
538,530 + Shewana3_0464 0.29 +0.0
538,538 - Shewana3_0464 0.31 -2.4
538,538 - Shewana3_0464 0.31 -0.8
538,538 - Shewana3_0464 0.31 +0.4
538,538 - Shewana3_0464 0.31 +0.3
538,538 - Shewana3_0464 0.31 -1.8
538,538 - Shewana3_0464 0.31 -1.6
538,572 + Shewana3_0464 0.41 -0.4
538,572 - Shewana3_0464 0.41 -3.5
538,578 + Shewana3_0464 0.43 -1.0
538,647 + Shewana3_0464 0.63 +0.1

Or see this region's nucleotide sequence