Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0340 and Shewana3_0341 are separated by 29 nucleotides Shewana3_0341 and Shewana3_0342 are separated by 6 nucleotides Shewana3_0342 and Shewana3_0343 overlap by 1 nucleotides Shewana3_0343 and Shewana3_0344 are separated by 9 nucleotides Shewana3_0344 and Shewana3_0345 overlap by 14 nucleotides
Shewana3_0340: Shewana3_0340 - transposase (RefSeq), at 375,622 to 376,017
_0340
Shewana3_0341: Shewana3_0341 - integrase catalytic subunit (RefSeq), at 376,047 to 376,850
_0341
Shewana3_0342: Shewana3_0342 - hypothetical protein (RefSeq), at 376,857 to 377,240
_0342
Shewana3_0343: Shewana3_0343 - acyl carrier protein (RefSeq), at 377,240 to 377,488
_0343
Shewana3_0344: Shewana3_0344 - acyl carrier protein, putative (RefSeq), at 377,498 to 377,752
_0344
Shewana3_0345: Shewana3_0345 - phospholipid/glycerol acyltransferase (RefSeq), at 377,739 to 378,587
_0345
Position (kb) 376
377
378 Strain fitness (log2 ratio) -1
0
1 at 376.875 kb on + strand at 376.943 kb on + strand, within Shewana3_0342 at 377.058 kb on - strand, within Shewana3_0342 at 377.059 kb on - strand, within Shewana3_0342 at 377.113 kb on - strand, within Shewana3_0342 at 377.144 kb on - strand, within Shewana3_0342 at 377.149 kb on - strand, within Shewana3_0342 at 377.243 kb on + strand at 377.265 kb on + strand, within Shewana3_0343 at 377.362 kb on + strand, within Shewana3_0343 at 377.362 kb on + strand, within Shewana3_0343 at 377.372 kb on + strand, within Shewana3_0343 at 377.380 kb on - strand, within Shewana3_0343 at 377.635 kb on + strand, within Shewana3_0344 at 377.683 kb on + strand, within Shewana3_0344 at 378.078 kb on + strand, within Shewana3_0345 at 378.086 kb on - strand, within Shewana3_0345 at 378.113 kb on - strand, within Shewana3_0345 at 378.193 kb on - strand, within Shewana3_0345
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 376,875 + -0.5 376,943 + Shewana3_0342 0.22 -0.2 377,058 - Shewana3_0342 0.52 -1.5 377,059 - Shewana3_0342 0.53 -1.0 377,113 - Shewana3_0342 0.67 -1.4 377,144 - Shewana3_0342 0.75 +0.3 377,149 - Shewana3_0342 0.76 -0.0 377,243 + -1.0 377,265 + Shewana3_0343 0.10 +0.3 377,362 + Shewana3_0343 0.49 -0.1 377,362 + Shewana3_0343 0.49 -1.7 377,372 + Shewana3_0343 0.53 +1.2 377,380 - Shewana3_0343 0.56 +0.6 377,635 + Shewana3_0344 0.54 +1.4 377,683 + Shewana3_0344 0.73 +0.1 378,078 + Shewana3_0345 0.40 -1.2 378,086 - Shewana3_0345 0.41 -0.9 378,113 - Shewana3_0345 0.44 -0.7 378,193 - Shewana3_0345 0.53 -0.5
Or see this region's nucleotide sequence