Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0168 and nudE are separated by 237 nucleotides nudE and Shewana3_0170 are separated by 70 nucleotides Shewana3_0170 and Shewana3_0171 are separated by 6 nucleotides Shewana3_0171 and Shewana3_0172 are separated by 230 nucleotides
Shewana3_0168: Shewana3_0168 - Ig family protein (RefSeq), at 191,630 to 202,264
_0168
Shewana3_0169: nudE - ADP-ribose diphosphatase NudE (RefSeq), at 202,502 to 203,053
nudE
Shewana3_0170: Shewana3_0170 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 203,124 to 203,936
_0170
Shewana3_0171: Shewana3_0171 - GCN5-related N-acetyltransferase (RefSeq), at 203,943 to 204,386
_0171
Shewana3_0172: Shewana3_0172 - TetR family transcriptional regulator (RefSeq), at 204,617 to 205,228
_0172
Position (kb) 203
204 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 202.187 kb on + strand at 202.470 kb on - strand at 202.602 kb on - strand, within nudE at 202.803 kb on + strand, within nudE at 202.818 kb on + strand, within nudE at 202.818 kb on + strand, within nudE at 202.887 kb on + strand, within nudE at 202.978 kb on - strand, within nudE at 203.319 kb on - strand, within Shewana3_0170 at 203.319 kb on - strand, within Shewana3_0170 at 203.319 kb on - strand, within Shewana3_0170 at 203.346 kb on - strand, within Shewana3_0170 at 203.424 kb on + strand, within Shewana3_0170 at 203.685 kb on + strand, within Shewana3_0170 at 203.685 kb on + strand, within Shewana3_0170 at 203.700 kb on + strand, within Shewana3_0170 at 203.700 kb on + strand, within Shewana3_0170 at 203.824 kb on - strand, within Shewana3_0170 at 204.166 kb on - strand, within Shewana3_0171 at 204.220 kb on + strand, within Shewana3_0171 at 204.449 kb on - strand at 204.491 kb on - strand at 204.602 kb on - strand at 204.604 kb on - strand at 204.607 kb on + strand at 204.657 kb on - strand at 204.661 kb on + strand at 204.707 kb on - strand, within Shewana3_0172 at 204.707 kb on - strand, within Shewana3_0172
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 202,187 + +1.6 202,470 - -1.9 202,602 - nudE Shewana3_0169 0.18 +0.9 202,803 + nudE Shewana3_0169 0.55 -0.4 202,818 + nudE Shewana3_0169 0.57 -0.8 202,818 + nudE Shewana3_0169 0.57 +1.9 202,887 + nudE Shewana3_0169 0.70 +0.5 202,978 - nudE Shewana3_0169 0.86 -2.8 203,319 - Shewana3_0170 0.24 -3.3 203,319 - Shewana3_0170 0.24 -0.6 203,319 - Shewana3_0170 0.24 -3.5 203,346 - Shewana3_0170 0.27 -1.9 203,424 + Shewana3_0170 0.37 -5.0 203,685 + Shewana3_0170 0.69 -5.5 203,685 + Shewana3_0170 0.69 -3.5 203,700 + Shewana3_0170 0.71 -0.9 203,700 + Shewana3_0170 0.71 -3.1 203,824 - Shewana3_0170 0.86 -4.1 204,166 - Shewana3_0171 0.50 +0.0 204,220 + Shewana3_0171 0.62 -0.9 204,449 - +1.5 204,491 - +0.2 204,602 - +0.4 204,604 - -0.3 204,607 + -1.7 204,657 - +0.3 204,661 + +0.6 204,707 - Shewana3_0172 0.15 -1.4 204,707 - Shewana3_0172 0.15 -0.7
Or see this region's nucleotide sequence