Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0055 and Shewana3_0056 are separated by 722 nucleotides Shewana3_0056 and Shewana3_0057 are separated by 577 nucleotides
Shewana3_0055: Shewana3_0055 - hypothetical protein (RefSeq), at 64,476 to 65,660
_0055
Shewana3_0056: Shewana3_0056 - hypothetical protein (RefSeq), at 66,383 to 67,246
_0056
Shewana3_0057: Shewana3_0057 - TrkH family potassium uptake protein (RefSeq), at 67,824 to 69,185
_0057
Position (kb)
66
67
68 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 65.388 kb on + strand, within Shewana3_0055 at 65.459 kb on - strand, within Shewana3_0055 at 65.495 kb on + strand, within Shewana3_0055 at 65.512 kb on + strand, within Shewana3_0055 at 65.520 kb on - strand, within Shewana3_0055 at 65.520 kb on - strand, within Shewana3_0055 at 65.520 kb on - strand, within Shewana3_0055 at 65.559 kb on - strand at 65.585 kb on - strand at 65.621 kb on + strand at 65.764 kb on - strand at 65.820 kb on + strand at 65.835 kb on - strand at 66.054 kb on - strand at 66.071 kb on - strand at 66.109 kb on - strand at 66.138 kb on - strand at 66.212 kb on + strand at 66.393 kb on - strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.412 kb on + strand at 66.420 kb on - strand at 66.420 kb on - strand at 66.420 kb on - strand at 66.420 kb on - strand at 66.794 kb on + strand, within Shewana3_0056 at 66.954 kb on - strand, within Shewana3_0056 at 66.964 kb on + strand, within Shewana3_0056 at 66.974 kb on - strand, within Shewana3_0056 at 67.013 kb on + strand, within Shewana3_0056 at 67.021 kb on - strand, within Shewana3_0056 at 67.164 kb on + strand at 67.280 kb on - strand at 67.365 kb on + strand at 67.414 kb on + strand at 67.665 kb on - strand at 67.787 kb on - strand at 67.813 kb on - strand at 67.823 kb on - strand at 68.209 kb on - strand, within Shewana3_0057 at 68.238 kb on + strand, within Shewana3_0057
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 65,388 + Shewana3_0055 0.77 -0.2 65,459 - Shewana3_0055 0.83 -0.4 65,495 + Shewana3_0055 0.86 -0.8 65,512 + Shewana3_0055 0.87 -0.7 65,520 - Shewana3_0055 0.88 +0.0 65,520 - Shewana3_0055 0.88 -1.5 65,520 - Shewana3_0055 0.88 +0.4 65,559 - -0.1 65,585 - -0.1 65,621 + +0.0 65,764 - -0.5 65,820 + -1.1 65,835 - -1.1 66,054 - +0.7 66,071 - -0.2 66,109 - +1.7 66,138 - +1.6 66,212 + -2.4 66,393 - -0.1 66,412 + -2.7 66,412 + -1.6 66,412 + -0.3 66,412 + -0.4 66,412 + +0.9 66,420 - -1.8 66,420 - +0.7 66,420 - -0.2 66,420 - -0.7 66,794 + Shewana3_0056 0.48 +0.4 66,954 - Shewana3_0056 0.66 -1.2 66,964 + Shewana3_0056 0.67 -0.6 66,974 - Shewana3_0056 0.68 +0.6 67,013 + Shewana3_0056 0.73 -0.1 67,021 - Shewana3_0056 0.74 +0.3 67,164 + -0.6 67,280 - -0.7 67,365 + +0.9 67,414 + -0.1 67,665 - +0.5 67,787 - +1.6 67,813 - +0.4 67,823 - +0.6 68,209 - Shewana3_0057 0.28 +0.1 68,238 + Shewana3_0057 0.30 +2.1
Or see this region's nucleotide sequence