Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4375 and Shewana3_4376 are separated by 76 nucleotides Shewana3_4376 and Shewana3_4377 overlap by 23 nucleotides Shewana3_4377 and Shewana3_4378 are separated by 78 nucleotides Shewana3_4378 and Shewana3_4379 are separated by 8 nucleotides
Shewana3_4375: Shewana3_4375 - hypothetical protein (RefSeq), at 263,170 to 263,847
_4375
Shewana3_4376: Shewana3_4376 - hypothetical protein (RefSeq), at 263,924 to 264,508
_4376
Shewana3_4377: Shewana3_4377 - phage integrase family protein (RefSeq), at 264,486 to 265,601
_4377
Shewana3_4378: Shewana3_4378 - hypothetical protein (RefSeq), at 265,680 to 266,051
_4378
Shewana3_4379: Shewana3_4379 - hypothetical protein (RefSeq), at 266,060 to 266,965
_4379
Position (kb) 264
265
266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 263.702 kb on + strand, within Shewana3_4375 at 264.032 kb on - strand, within Shewana3_4376 at 264.057 kb on + strand, within Shewana3_4376 at 264.480 kb on + strand at 264.522 kb on - strand at 264.524 kb on + strand at 264.524 kb on + strand at 264.524 kb on + strand at 264.541 kb on + strand at 264.583 kb on + strand at 264.674 kb on + strand, within Shewana3_4377 at 264.920 kb on + strand, within Shewana3_4377 at 264.920 kb on + strand, within Shewana3_4377 at 264.920 kb on + strand, within Shewana3_4377 at 264.965 kb on + strand, within Shewana3_4377 at 264.995 kb on + strand, within Shewana3_4377 at 265.028 kb on - strand, within Shewana3_4377 at 265.276 kb on + strand, within Shewana3_4377 at 265.276 kb on + strand, within Shewana3_4377 at 265.338 kb on + strand, within Shewana3_4377 at 265.346 kb on - strand, within Shewana3_4377 at 265.550 kb on + strand at 265.558 kb on - strand at 266.071 kb on - strand at 266.125 kb on + strand at 266.139 kb on - strand at 266.215 kb on + strand, within Shewana3_4379 at 266.223 kb on - strand, within Shewana3_4379 at 266.301 kb on - strand, within Shewana3_4379 at 266.435 kb on - strand, within Shewana3_4379 at 266.474 kb on - strand, within Shewana3_4379 at 266.478 kb on + strand, within Shewana3_4379 at 266.528 kb on + strand, within Shewana3_4379 at 266.533 kb on + strand, within Shewana3_4379 at 266.548 kb on - strand, within Shewana3_4379
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 263,702 + Shewana3_4375 0.78 -0.3 264,032 - Shewana3_4376 0.18 -1.1 264,057 + Shewana3_4376 0.23 -2.4 264,480 + +0.3 264,522 - -0.4 264,524 + -2.0 264,524 + -1.2 264,524 + +0.4 264,541 + -1.8 264,583 + -2.3 264,674 + Shewana3_4377 0.17 -1.1 264,920 + Shewana3_4377 0.39 +0.5 264,920 + Shewana3_4377 0.39 -0.0 264,920 + Shewana3_4377 0.39 -0.5 264,965 + Shewana3_4377 0.43 -0.9 264,995 + Shewana3_4377 0.46 +1.0 265,028 - Shewana3_4377 0.49 +1.5 265,276 + Shewana3_4377 0.71 -1.6 265,276 + Shewana3_4377 0.71 +2.1 265,338 + Shewana3_4377 0.76 +1.6 265,346 - Shewana3_4377 0.77 +1.3 265,550 + -1.4 265,558 - +1.2 266,071 - -2.3 266,125 + -1.8 266,139 - +1.2 266,215 + Shewana3_4379 0.17 -0.4 266,223 - Shewana3_4379 0.18 -0.9 266,301 - Shewana3_4379 0.27 +2.7 266,435 - Shewana3_4379 0.41 -0.9 266,474 - Shewana3_4379 0.46 +0.2 266,478 + Shewana3_4379 0.46 +0.7 266,528 + Shewana3_4379 0.52 +0.2 266,533 + Shewana3_4379 0.52 +1.2 266,548 - Shewana3_4379 0.54 -0.5
Or see this region's nucleotide sequence