Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4277

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4276 and Shewana3_4277 are separated by 120 nucleotidesShewana3_4277 and Shewana3_4278 are separated by 75 nucleotides Shewana3_4276: Shewana3_4276 - site-binding protein, DNA replication region (RefSeq), at 157,936 to 158,808 _4276 Shewana3_4277: Shewana3_4277 - OmpA/MotB domain-containing protein (RefSeq), at 158,929 to 159,672 _4277 Shewana3_4278: Shewana3_4278 - hypothetical protein (RefSeq), at 159,748 to 160,467 _4278 Position (kb) 158 159 160Strain fitness (log2 ratio) -2 -1 0 1at 158.143 kb on - strand, within Shewana3_4276at 158.426 kb on + strand, within Shewana3_4276at 158.445 kb on - strand, within Shewana3_4276at 158.453 kb on - strand, within Shewana3_4276at 158.550 kb on + strand, within Shewana3_4276at 158.550 kb on + strand, within Shewana3_4276at 158.550 kb on + strand, within Shewana3_4276at 158.558 kb on - strand, within Shewana3_4276at 158.558 kb on - strand, within Shewana3_4276at 158.558 kb on - strand, within Shewana3_4276at 158.618 kb on - strand, within Shewana3_4276at 158.620 kb on - strand, within Shewana3_4276at 158.806 kb on - strandat 159.088 kb on + strand, within Shewana3_4277at 159.088 kb on + strand, within Shewana3_4277at 159.096 kb on + strand, within Shewana3_4277at 159.391 kb on - strand, within Shewana3_4277at 159.449 kb on + strand, within Shewana3_4277at 159.526 kb on - strand, within Shewana3_4277at 159.612 kb on + strandat 159.635 kb on + strandat 159.663 kb on + strandat 159.671 kb on - strandat 159.671 kb on - strandat 159.765 kb on + strandat 159.902 kb on + strand, within Shewana3_4278at 160.023 kb on + strand, within Shewana3_4278at 160.036 kb on + strand, within Shewana3_4278at 160.187 kb on - strand, within Shewana3_4278at 160.311 kb on + strand, within Shewana3_4278at 160.389 kb on + strand, within Shewana3_4278at 160.430 kb on + strandat 160.446 kb on + strandat 160.446 kb on + strandat 160.446 kb on + strandat 160.451 kb on + strandat 160.451 kb on + strandat 160.454 kb on - strandat 160.454 kb on - strandat 160.454 kb on - strandat 160.454 kb on - strandat 160.499 kb on - strandat 160.547 kb on + strandat 160.605 kb on + strandat 160.608 kb on - strandat 160.664 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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158,143 - Shewana3_4276 0.24 +0.4
158,426 + Shewana3_4276 0.56 -0.5
158,445 - Shewana3_4276 0.58 -0.7
158,453 - Shewana3_4276 0.59 +0.1
158,550 + Shewana3_4276 0.70 +0.2
158,550 + Shewana3_4276 0.70 +0.3
158,550 + Shewana3_4276 0.70 +0.5
158,558 - Shewana3_4276 0.71 +0.5
158,558 - Shewana3_4276 0.71 -1.2
158,558 - Shewana3_4276 0.71 -1.6
158,618 - Shewana3_4276 0.78 -1.8
158,620 - Shewana3_4276 0.78 -2.0
158,806 - +1.1
159,088 + Shewana3_4277 0.21 -0.6
159,088 + Shewana3_4277 0.21 +1.1
159,096 + Shewana3_4277 0.22 -1.2
159,391 - Shewana3_4277 0.62 -0.8
159,449 + Shewana3_4277 0.70 -1.8
159,526 - Shewana3_4277 0.80 -0.3
159,612 + +0.3
159,635 + -1.1
159,663 + -0.9
159,671 - +1.3
159,671 - +1.1
159,765 + -0.7
159,902 + Shewana3_4278 0.21 +1.2
160,023 + Shewana3_4278 0.38 -1.4
160,036 + Shewana3_4278 0.40 -0.0
160,187 - Shewana3_4278 0.61 -1.2
160,311 + Shewana3_4278 0.78 +1.7
160,389 + Shewana3_4278 0.89 +0.4
160,430 + +0.3
160,446 + +0.3
160,446 + -0.9
160,446 + +0.6
160,451 + -0.8
160,451 + +0.9
160,454 - +0.9
160,454 - +0.5
160,454 - +0.1
160,454 - +1.2
160,499 - -0.7
160,547 + -2.2
160,605 + +1.2
160,608 - -0.6
160,664 + +0.4

Or see this region's nucleotide sequence