Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4275

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4273 and Shewana3_4274 are separated by 13 nucleotidesShewana3_4274 and Shewana3_4275 are separated by 87 nucleotidesShewana3_4275 and Shewana3_4276 are separated by 143 nucleotides Shewana3_4273: Shewana3_4273 - hypothetical protein (RefSeq), at 155,350 to 156,240 _4273 Shewana3_4274: Shewana3_4274 - hypothetical protein (RefSeq), at 156,254 to 156,799 _4274 Shewana3_4275: Shewana3_4275 - hypothetical protein (RefSeq), at 156,887 to 157,792 _4275 Shewana3_4276: Shewana3_4276 - site-binding protein, DNA replication region (RefSeq), at 157,936 to 158,808 _4276 Position (kb) 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 155.897 kb on + strand, within Shewana3_4273at 155.968 kb on + strand, within Shewana3_4273at 155.969 kb on - strand, within Shewana3_4273at 155.969 kb on - strand, within Shewana3_4273at 156.038 kb on + strand, within Shewana3_4273at 156.134 kb on - strand, within Shewana3_4273at 156.210 kb on - strandat 156.324 kb on + strand, within Shewana3_4274at 156.357 kb on - strand, within Shewana3_4274at 156.437 kb on + strand, within Shewana3_4274at 156.469 kb on + strand, within Shewana3_4274at 156.469 kb on + strand, within Shewana3_4274at 156.518 kb on - strand, within Shewana3_4274at 156.602 kb on + strand, within Shewana3_4274at 156.685 kb on + strand, within Shewana3_4274at 156.741 kb on + strand, within Shewana3_4274at 157.103 kb on - strand, within Shewana3_4275at 157.103 kb on - strand, within Shewana3_4275at 157.120 kb on - strand, within Shewana3_4275at 157.129 kb on - strand, within Shewana3_4275at 157.507 kb on - strand, within Shewana3_4275at 157.515 kb on - strand, within Shewana3_4275at 157.601 kb on - strand, within Shewana3_4275at 157.614 kb on - strand, within Shewana3_4275at 157.694 kb on - strand, within Shewana3_4275at 157.694 kb on - strand, within Shewana3_4275at 157.824 kb on - strandat 158.143 kb on - strand, within Shewana3_4276at 158.426 kb on + strand, within Shewana3_4276at 158.445 kb on - strand, within Shewana3_4276at 158.453 kb on - strand, within Shewana3_4276at 158.550 kb on + strand, within Shewana3_4276at 158.550 kb on + strand, within Shewana3_4276at 158.550 kb on + strand, within Shewana3_4276at 158.558 kb on - strand, within Shewana3_4276at 158.558 kb on - strand, within Shewana3_4276at 158.558 kb on - strand, within Shewana3_4276at 158.618 kb on - strand, within Shewana3_4276at 158.620 kb on - strand, within Shewana3_4276

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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155,897 + Shewana3_4273 0.61 -0.4
155,968 + Shewana3_4273 0.69 -0.2
155,969 - Shewana3_4273 0.69 -1.1
155,969 - Shewana3_4273 0.69 -0.8
156,038 + Shewana3_4273 0.77 -0.2
156,134 - Shewana3_4273 0.88 -0.2
156,210 - +1.1
156,324 + Shewana3_4274 0.13 +0.2
156,357 - Shewana3_4274 0.19 +2.1
156,437 + Shewana3_4274 0.34 +0.5
156,469 + Shewana3_4274 0.39 +0.1
156,469 + Shewana3_4274 0.39 -3.2
156,518 - Shewana3_4274 0.48 -1.6
156,602 + Shewana3_4274 0.64 -0.5
156,685 + Shewana3_4274 0.79 +1.6
156,741 + Shewana3_4274 0.89 +0.7
157,103 - Shewana3_4275 0.24 -1.4
157,103 - Shewana3_4275 0.24 -2.2
157,120 - Shewana3_4275 0.26 -2.2
157,129 - Shewana3_4275 0.27 -0.2
157,507 - Shewana3_4275 0.68 -1.4
157,515 - Shewana3_4275 0.69 -1.4
157,601 - Shewana3_4275 0.79 -3.0
157,614 - Shewana3_4275 0.80 -2.9
157,694 - Shewana3_4275 0.89 -2.1
157,694 - Shewana3_4275 0.89 +1.1
157,824 - -0.5
158,143 - Shewana3_4276 0.24 +0.4
158,426 + Shewana3_4276 0.56 -0.5
158,445 - Shewana3_4276 0.58 -0.7
158,453 - Shewana3_4276 0.59 +0.1
158,550 + Shewana3_4276 0.70 +0.2
158,550 + Shewana3_4276 0.70 +0.3
158,550 + Shewana3_4276 0.70 +0.5
158,558 - Shewana3_4276 0.71 +0.5
158,558 - Shewana3_4276 0.71 -1.2
158,558 - Shewana3_4276 0.71 -1.6
158,618 - Shewana3_4276 0.78 -1.8
158,620 - Shewana3_4276 0.78 -2.0

Or see this region's nucleotide sequence