Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4273 and Shewana3_4274 are separated by 13 nucleotides Shewana3_4274 and Shewana3_4275 are separated by 87 nucleotides Shewana3_4275 and Shewana3_4276 are separated by 143 nucleotides
Shewana3_4273: Shewana3_4273 - hypothetical protein (RefSeq), at 155,350 to 156,240
_4273
Shewana3_4274: Shewana3_4274 - hypothetical protein (RefSeq), at 156,254 to 156,799
_4274
Shewana3_4275: Shewana3_4275 - hypothetical protein (RefSeq), at 156,887 to 157,792
_4275
Shewana3_4276: Shewana3_4276 - site-binding protein, DNA replication region (RefSeq), at 157,936 to 158,808
_4276
Position (kb)
156
157
158 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 155.897 kb on + strand, within Shewana3_4273 at 155.968 kb on + strand, within Shewana3_4273 at 155.969 kb on - strand, within Shewana3_4273 at 155.969 kb on - strand, within Shewana3_4273 at 156.038 kb on + strand, within Shewana3_4273 at 156.134 kb on - strand, within Shewana3_4273 at 156.210 kb on - strand at 156.324 kb on + strand, within Shewana3_4274 at 156.357 kb on - strand, within Shewana3_4274 at 156.437 kb on + strand, within Shewana3_4274 at 156.469 kb on + strand, within Shewana3_4274 at 156.469 kb on + strand, within Shewana3_4274 at 156.518 kb on - strand, within Shewana3_4274 at 156.602 kb on + strand, within Shewana3_4274 at 156.685 kb on + strand, within Shewana3_4274 at 156.741 kb on + strand, within Shewana3_4274 at 157.103 kb on - strand, within Shewana3_4275 at 157.103 kb on - strand, within Shewana3_4275 at 157.120 kb on - strand, within Shewana3_4275 at 157.129 kb on - strand, within Shewana3_4275 at 157.507 kb on - strand, within Shewana3_4275 at 157.515 kb on - strand, within Shewana3_4275 at 157.601 kb on - strand, within Shewana3_4275 at 157.614 kb on - strand, within Shewana3_4275 at 157.694 kb on - strand, within Shewana3_4275 at 157.694 kb on - strand, within Shewana3_4275 at 157.824 kb on - strand at 158.143 kb on - strand, within Shewana3_4276 at 158.426 kb on + strand, within Shewana3_4276 at 158.445 kb on - strand, within Shewana3_4276 at 158.453 kb on - strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.618 kb on - strand, within Shewana3_4276 at 158.620 kb on - strand, within Shewana3_4276
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 155,897 + Shewana3_4273 0.61 -0.4 155,968 + Shewana3_4273 0.69 -0.2 155,969 - Shewana3_4273 0.69 -1.1 155,969 - Shewana3_4273 0.69 -0.8 156,038 + Shewana3_4273 0.77 -0.2 156,134 - Shewana3_4273 0.88 -0.2 156,210 - +1.1 156,324 + Shewana3_4274 0.13 +0.2 156,357 - Shewana3_4274 0.19 +2.1 156,437 + Shewana3_4274 0.34 +0.5 156,469 + Shewana3_4274 0.39 +0.1 156,469 + Shewana3_4274 0.39 -3.2 156,518 - Shewana3_4274 0.48 -1.6 156,602 + Shewana3_4274 0.64 -0.5 156,685 + Shewana3_4274 0.79 +1.6 156,741 + Shewana3_4274 0.89 +0.7 157,103 - Shewana3_4275 0.24 -1.4 157,103 - Shewana3_4275 0.24 -2.2 157,120 - Shewana3_4275 0.26 -2.2 157,129 - Shewana3_4275 0.27 -0.2 157,507 - Shewana3_4275 0.68 -1.4 157,515 - Shewana3_4275 0.69 -1.4 157,601 - Shewana3_4275 0.79 -3.0 157,614 - Shewana3_4275 0.80 -2.9 157,694 - Shewana3_4275 0.89 -2.1 157,694 - Shewana3_4275 0.89 +1.1 157,824 - -0.5 158,143 - Shewana3_4276 0.24 +0.4 158,426 + Shewana3_4276 0.56 -0.5 158,445 - Shewana3_4276 0.58 -0.7 158,453 - Shewana3_4276 0.59 +0.1 158,550 + Shewana3_4276 0.70 +0.2 158,550 + Shewana3_4276 0.70 +0.3 158,550 + Shewana3_4276 0.70 +0.5 158,558 - Shewana3_4276 0.71 +0.5 158,558 - Shewana3_4276 0.71 -1.2 158,558 - Shewana3_4276 0.71 -1.6 158,618 - Shewana3_4276 0.78 -1.8 158,620 - Shewana3_4276 0.78 -2.0
Or see this region's nucleotide sequence