Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3268

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3266 and Dshi_3267 are separated by 2 nucleotidesDshi_3267 and Dshi_3268 are separated by 74 nucleotidesDshi_3268 and Dshi_3269 overlap by 4 nucleotides Dshi_3266: Dshi_3266 - surface presentation of antigens (SPOA) protein (RefSeq), at 3,431,658 to 3,431,927 _3266 Dshi_3267: Dshi_3267 - flagellar biosynthetic protein FliP (RefSeq), at 3,431,930 to 3,432,658 _3267 Dshi_3268: Dshi_3268 - coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein (RefSeq), at 3,432,733 to 3,433,962 _3268 Dshi_3269: Dshi_3269 - L-carnitine dehydratase/bile acid-inducible protein F (RefSeq), at 3,433,959 to 3,435,065 _3269 Position (kb) 3432 3433 3434Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3431.746 kb on + strand, within Dshi_3266at 3431.800 kb on + strand, within Dshi_3266at 3431.850 kb on - strand, within Dshi_3266at 3431.880 kb on - strand, within Dshi_3266at 3431.930 kb on - strandat 3431.947 kb on - strandat 3432.072 kb on - strand, within Dshi_3267at 3432.164 kb on + strand, within Dshi_3267at 3432.202 kb on + strand, within Dshi_3267at 3432.204 kb on - strand, within Dshi_3267at 3432.236 kb on + strand, within Dshi_3267at 3432.236 kb on + strand, within Dshi_3267at 3432.244 kb on - strand, within Dshi_3267at 3432.244 kb on - strand, within Dshi_3267at 3432.331 kb on + strand, within Dshi_3267at 3432.339 kb on - strand, within Dshi_3267at 3432.350 kb on - strand, within Dshi_3267at 3432.399 kb on - strand, within Dshi_3267at 3432.441 kb on + strand, within Dshi_3267at 3432.449 kb on - strand, within Dshi_3267at 3432.482 kb on + strand, within Dshi_3267at 3432.530 kb on + strand, within Dshi_3267at 3432.553 kb on - strand, within Dshi_3267at 3432.660 kb on - strandat 3432.738 kb on - strandat 3432.744 kb on + strandat 3432.744 kb on + strandat 3432.748 kb on - strandat 3432.752 kb on - strandat 3432.865 kb on + strand, within Dshi_3268at 3432.895 kb on + strand, within Dshi_3268at 3432.905 kb on - strand, within Dshi_3268at 3432.980 kb on + strand, within Dshi_3268at 3432.980 kb on + strand, within Dshi_3268at 3433.053 kb on + strand, within Dshi_3268at 3433.060 kb on + strand, within Dshi_3268at 3433.074 kb on + strand, within Dshi_3268at 3433.081 kb on - strand, within Dshi_3268at 3433.161 kb on - strand, within Dshi_3268at 3433.222 kb on - strand, within Dshi_3268at 3433.243 kb on + strand, within Dshi_3268at 3433.250 kb on - strand, within Dshi_3268at 3433.251 kb on - strand, within Dshi_3268at 3433.270 kb on + strand, within Dshi_3268at 3433.287 kb on + strand, within Dshi_3268at 3433.287 kb on + strand, within Dshi_3268at 3433.328 kb on - strand, within Dshi_3268at 3433.526 kb on + strand, within Dshi_3268at 3433.681 kb on + strand, within Dshi_3268at 3433.689 kb on - strand, within Dshi_3268at 3433.725 kb on + strand, within Dshi_3268at 3433.734 kb on + strand, within Dshi_3268at 3433.818 kb on + strand, within Dshi_3268at 3433.851 kb on - strandat 3433.931 kb on + strandat 3434.063 kb on + strandat 3434.107 kb on - strand, within Dshi_3269at 3434.107 kb on - strand, within Dshi_3269at 3434.125 kb on - strand, within Dshi_3269at 3434.214 kb on + strand, within Dshi_3269at 3434.300 kb on - strand, within Dshi_3269at 3434.365 kb on + strand, within Dshi_3269at 3434.399 kb on - strandat 3434.545 kb on + strand, within Dshi_3269at 3434.561 kb on + strand, within Dshi_3269at 3434.602 kb on - strand, within Dshi_3269at 3434.609 kb on + strand, within Dshi_3269at 3434.665 kb on + strand, within Dshi_3269at 3434.665 kb on + strand, within Dshi_3269at 3434.673 kb on - strand, within Dshi_3269at 3434.673 kb on - strand, within Dshi_3269at 3434.708 kb on - strand, within Dshi_3269at 3434.735 kb on + strand, within Dshi_3269at 3434.820 kb on - strand, within Dshi_3269at 3434.821 kb on - strand, within Dshi_3269at 3434.932 kb on - strand, within Dshi_3269

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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3,431,746 + Dshi_3266 0.33 +0.3
3,431,800 + Dshi_3266 0.53 -0.7
3,431,850 - Dshi_3266 0.71 -0.6
3,431,880 - Dshi_3266 0.82 +0.5
3,431,930 - -1.2
3,431,947 - +0.8
3,432,072 - Dshi_3267 0.19 +1.1
3,432,164 + Dshi_3267 0.32 -0.5
3,432,202 + Dshi_3267 0.37 -0.6
3,432,204 - Dshi_3267 0.38 +0.0
3,432,236 + Dshi_3267 0.42 +1.0
3,432,236 + Dshi_3267 0.42 +0.8
3,432,244 - Dshi_3267 0.43 -2.5
3,432,244 - Dshi_3267 0.43 -0.8
3,432,331 + Dshi_3267 0.55 -0.7
3,432,339 - Dshi_3267 0.56 +0.4
3,432,350 - Dshi_3267 0.58 +3.3
3,432,399 - Dshi_3267 0.64 +0.7
3,432,441 + Dshi_3267 0.70 -0.1
3,432,449 - Dshi_3267 0.71 -0.2
3,432,482 + Dshi_3267 0.76 -0.2
3,432,530 + Dshi_3267 0.82 -0.2
3,432,553 - Dshi_3267 0.85 +1.3
3,432,660 - -0.8
3,432,738 - +0.3
3,432,744 + -0.1
3,432,744 + +2.3
3,432,748 - +2.1
3,432,752 - +0.8
3,432,865 + Dshi_3268 0.11 -0.3
3,432,895 + Dshi_3268 0.13 -1.0
3,432,905 - Dshi_3268 0.14 -1.6
3,432,980 + Dshi_3268 0.20 -1.0
3,432,980 + Dshi_3268 0.20 -1.3
3,433,053 + Dshi_3268 0.26 +2.3
3,433,060 + Dshi_3268 0.27 -0.6
3,433,074 + Dshi_3268 0.28 +0.2
3,433,081 - Dshi_3268 0.28 -0.8
3,433,161 - Dshi_3268 0.35 -0.7
3,433,222 - Dshi_3268 0.40 -1.8
3,433,243 + Dshi_3268 0.41 -0.8
3,433,250 - Dshi_3268 0.42 -0.1
3,433,251 - Dshi_3268 0.42 +3.5
3,433,270 + Dshi_3268 0.44 -2.6
3,433,287 + Dshi_3268 0.45 +1.1
3,433,287 + Dshi_3268 0.45 -1.2
3,433,328 - Dshi_3268 0.48 -0.1
3,433,526 + Dshi_3268 0.64 +0.3
3,433,681 + Dshi_3268 0.77 -0.8
3,433,689 - Dshi_3268 0.78 +0.3
3,433,725 + Dshi_3268 0.81 -1.2
3,433,734 + Dshi_3268 0.81 -2.1
3,433,818 + Dshi_3268 0.88 +0.1
3,433,851 - +1.3
3,433,931 + +0.0
3,434,063 + +0.9
3,434,107 - Dshi_3269 0.13 +0.5
3,434,107 - Dshi_3269 0.13 -1.9
3,434,125 - Dshi_3269 0.15 +1.6
3,434,214 + Dshi_3269 0.23 -3.3
3,434,300 - Dshi_3269 0.31 +1.3
3,434,365 + Dshi_3269 0.37 -2.1
3,434,399 - +0.3
3,434,545 + Dshi_3269 0.53 -0.9
3,434,561 + Dshi_3269 0.54 +1.9
3,434,602 - Dshi_3269 0.58 -0.2
3,434,609 + Dshi_3269 0.59 -1.4
3,434,665 + Dshi_3269 0.64 -0.3
3,434,665 + Dshi_3269 0.64 -2.0
3,434,673 - Dshi_3269 0.64 -1.0
3,434,673 - Dshi_3269 0.64 +0.8
3,434,708 - Dshi_3269 0.68 -1.8
3,434,735 + Dshi_3269 0.70 -3.1
3,434,820 - Dshi_3269 0.78 -0.9
3,434,821 - Dshi_3269 0.78 +0.2
3,434,932 - Dshi_3269 0.88 +0.4

Or see this region's nucleotide sequence