Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3266 and Dshi_3267 are separated by 2 nucleotides Dshi_3267 and Dshi_3268 are separated by 74 nucleotides Dshi_3268 and Dshi_3269 overlap by 4 nucleotides
Dshi_3266: Dshi_3266 - surface presentation of antigens (SPOA) protein (RefSeq), at 3,431,658 to 3,431,927
_3266
Dshi_3267: Dshi_3267 - flagellar biosynthetic protein FliP (RefSeq), at 3,431,930 to 3,432,658
_3267
Dshi_3268: Dshi_3268 - coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein (RefSeq), at 3,432,733 to 3,433,962
_3268
Dshi_3269: Dshi_3269 - L-carnitine dehydratase/bile acid-inducible protein F (RefSeq), at 3,433,959 to 3,435,065
_3269
Position (kb)
3432
3433
3434 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3431.746 kb on + strand, within Dshi_3266 at 3431.800 kb on + strand, within Dshi_3266 at 3431.850 kb on - strand, within Dshi_3266 at 3431.880 kb on - strand, within Dshi_3266 at 3431.930 kb on - strand at 3431.947 kb on - strand at 3432.072 kb on - strand, within Dshi_3267 at 3432.164 kb on + strand, within Dshi_3267 at 3432.202 kb on + strand, within Dshi_3267 at 3432.204 kb on - strand, within Dshi_3267 at 3432.236 kb on + strand, within Dshi_3267 at 3432.236 kb on + strand, within Dshi_3267 at 3432.244 kb on - strand, within Dshi_3267 at 3432.244 kb on - strand, within Dshi_3267 at 3432.331 kb on + strand, within Dshi_3267 at 3432.339 kb on - strand, within Dshi_3267 at 3432.350 kb on - strand, within Dshi_3267 at 3432.399 kb on - strand, within Dshi_3267 at 3432.441 kb on + strand, within Dshi_3267 at 3432.449 kb on - strand, within Dshi_3267 at 3432.482 kb on + strand, within Dshi_3267 at 3432.530 kb on + strand, within Dshi_3267 at 3432.553 kb on - strand, within Dshi_3267 at 3432.660 kb on - strand at 3432.738 kb on - strand at 3432.744 kb on + strand at 3432.744 kb on + strand at 3432.748 kb on - strand at 3432.752 kb on - strand at 3432.865 kb on + strand, within Dshi_3268 at 3432.895 kb on + strand, within Dshi_3268 at 3432.905 kb on - strand, within Dshi_3268 at 3432.980 kb on + strand, within Dshi_3268 at 3432.980 kb on + strand, within Dshi_3268 at 3433.053 kb on + strand, within Dshi_3268 at 3433.060 kb on + strand, within Dshi_3268 at 3433.074 kb on + strand, within Dshi_3268 at 3433.081 kb on - strand, within Dshi_3268 at 3433.161 kb on - strand, within Dshi_3268 at 3433.222 kb on - strand, within Dshi_3268 at 3433.243 kb on + strand, within Dshi_3268 at 3433.250 kb on - strand, within Dshi_3268 at 3433.251 kb on - strand, within Dshi_3268 at 3433.270 kb on + strand, within Dshi_3268 at 3433.287 kb on + strand, within Dshi_3268 at 3433.287 kb on + strand, within Dshi_3268 at 3433.328 kb on - strand, within Dshi_3268 at 3433.526 kb on + strand, within Dshi_3268 at 3433.681 kb on + strand, within Dshi_3268 at 3433.689 kb on - strand, within Dshi_3268 at 3433.725 kb on + strand, within Dshi_3268 at 3433.734 kb on + strand, within Dshi_3268 at 3433.818 kb on + strand, within Dshi_3268 at 3433.851 kb on - strand at 3433.931 kb on + strand at 3434.063 kb on + strand at 3434.107 kb on - strand, within Dshi_3269 at 3434.107 kb on - strand, within Dshi_3269 at 3434.125 kb on - strand, within Dshi_3269 at 3434.214 kb on + strand, within Dshi_3269 at 3434.300 kb on - strand, within Dshi_3269 at 3434.365 kb on + strand, within Dshi_3269 at 3434.399 kb on - strand at 3434.545 kb on + strand, within Dshi_3269 at 3434.561 kb on + strand, within Dshi_3269 at 3434.602 kb on - strand, within Dshi_3269 at 3434.609 kb on + strand, within Dshi_3269 at 3434.665 kb on + strand, within Dshi_3269 at 3434.665 kb on + strand, within Dshi_3269 at 3434.673 kb on - strand, within Dshi_3269 at 3434.673 kb on - strand, within Dshi_3269 at 3434.708 kb on - strand, within Dshi_3269 at 3434.735 kb on + strand, within Dshi_3269 at 3434.820 kb on - strand, within Dshi_3269 at 3434.821 kb on - strand, within Dshi_3269 at 3434.932 kb on - strand, within Dshi_3269
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 3,431,746 + Dshi_3266 0.33 +0.3 3,431,800 + Dshi_3266 0.53 -0.7 3,431,850 - Dshi_3266 0.71 -0.6 3,431,880 - Dshi_3266 0.82 +0.5 3,431,930 - -1.2 3,431,947 - +0.8 3,432,072 - Dshi_3267 0.19 +1.1 3,432,164 + Dshi_3267 0.32 -0.5 3,432,202 + Dshi_3267 0.37 -0.6 3,432,204 - Dshi_3267 0.38 +0.0 3,432,236 + Dshi_3267 0.42 +1.0 3,432,236 + Dshi_3267 0.42 +0.8 3,432,244 - Dshi_3267 0.43 -2.5 3,432,244 - Dshi_3267 0.43 -0.8 3,432,331 + Dshi_3267 0.55 -0.7 3,432,339 - Dshi_3267 0.56 +0.4 3,432,350 - Dshi_3267 0.58 +3.3 3,432,399 - Dshi_3267 0.64 +0.7 3,432,441 + Dshi_3267 0.70 -0.1 3,432,449 - Dshi_3267 0.71 -0.2 3,432,482 + Dshi_3267 0.76 -0.2 3,432,530 + Dshi_3267 0.82 -0.2 3,432,553 - Dshi_3267 0.85 +1.3 3,432,660 - -0.8 3,432,738 - +0.3 3,432,744 + -0.1 3,432,744 + +2.3 3,432,748 - +2.1 3,432,752 - +0.8 3,432,865 + Dshi_3268 0.11 -0.3 3,432,895 + Dshi_3268 0.13 -1.0 3,432,905 - Dshi_3268 0.14 -1.6 3,432,980 + Dshi_3268 0.20 -1.0 3,432,980 + Dshi_3268 0.20 -1.3 3,433,053 + Dshi_3268 0.26 +2.3 3,433,060 + Dshi_3268 0.27 -0.6 3,433,074 + Dshi_3268 0.28 +0.2 3,433,081 - Dshi_3268 0.28 -0.8 3,433,161 - Dshi_3268 0.35 -0.7 3,433,222 - Dshi_3268 0.40 -1.8 3,433,243 + Dshi_3268 0.41 -0.8 3,433,250 - Dshi_3268 0.42 -0.1 3,433,251 - Dshi_3268 0.42 +3.5 3,433,270 + Dshi_3268 0.44 -2.6 3,433,287 + Dshi_3268 0.45 +1.1 3,433,287 + Dshi_3268 0.45 -1.2 3,433,328 - Dshi_3268 0.48 -0.1 3,433,526 + Dshi_3268 0.64 +0.3 3,433,681 + Dshi_3268 0.77 -0.8 3,433,689 - Dshi_3268 0.78 +0.3 3,433,725 + Dshi_3268 0.81 -1.2 3,433,734 + Dshi_3268 0.81 -2.1 3,433,818 + Dshi_3268 0.88 +0.1 3,433,851 - +1.3 3,433,931 + +0.0 3,434,063 + +0.9 3,434,107 - Dshi_3269 0.13 +0.5 3,434,107 - Dshi_3269 0.13 -1.9 3,434,125 - Dshi_3269 0.15 +1.6 3,434,214 + Dshi_3269 0.23 -3.3 3,434,300 - Dshi_3269 0.31 +1.3 3,434,365 + Dshi_3269 0.37 -2.1 3,434,399 - +0.3 3,434,545 + Dshi_3269 0.53 -0.9 3,434,561 + Dshi_3269 0.54 +1.9 3,434,602 - Dshi_3269 0.58 -0.2 3,434,609 + Dshi_3269 0.59 -1.4 3,434,665 + Dshi_3269 0.64 -0.3 3,434,665 + Dshi_3269 0.64 -2.0 3,434,673 - Dshi_3269 0.64 -1.0 3,434,673 - Dshi_3269 0.64 +0.8 3,434,708 - Dshi_3269 0.68 -1.8 3,434,735 + Dshi_3269 0.70 -3.1 3,434,820 - Dshi_3269 0.78 -0.9 3,434,821 - Dshi_3269 0.78 +0.2 3,434,932 - Dshi_3269 0.88 +0.4
Or see this region's nucleotide sequence