Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3050

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3049 and Dshi_3050 are separated by 243 nucleotidesDshi_3050 and Dshi_3051 are separated by 271 nucleotidesDshi_3051 and Dshi_3052 are separated by 146 nucleotides Dshi_3049: Dshi_3049 - NAD-dependent epimerase/dehydratase (RefSeq), at 3,217,365 to 3,218,309 _3049 Dshi_3050: Dshi_3050 - Citrate (pro-3S)-lyase (RefSeq), at 3,218,553 to 3,219,509 _3050 Dshi_3051: Dshi_3051 - hypothetical protein (RefSeq), at 3,219,781 to 3,220,143 _3051 Dshi_3052: Dshi_3052 - hypothetical protein (RefSeq), at 3,220,290 to 3,220,997 _3052 Position (kb) 3218 3219 3220Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3217.675 kb on + strand, within Dshi_3049at 3217.722 kb on + strand, within Dshi_3049at 3217.804 kb on - strand, within Dshi_3049at 3217.811 kb on + strand, within Dshi_3049at 3218.000 kb on - strand, within Dshi_3049at 3218.057 kb on - strand, within Dshi_3049at 3218.070 kb on + strand, within Dshi_3049at 3218.078 kb on - strand, within Dshi_3049at 3218.180 kb on - strand, within Dshi_3049at 3218.361 kb on + strandat 3218.435 kb on - strandat 3218.656 kb on + strand, within Dshi_3050at 3218.656 kb on + strand, within Dshi_3050at 3218.664 kb on - strand, within Dshi_3050at 3218.932 kb on + strand, within Dshi_3050at 3219.106 kb on - strand, within Dshi_3050at 3219.117 kb on + strand, within Dshi_3050at 3219.150 kb on - strand, within Dshi_3050at 3219.301 kb on - strand, within Dshi_3050at 3219.353 kb on - strand, within Dshi_3050at 3219.491 kb on - strandat 3219.666 kb on - strandat 3219.667 kb on - strandat 3219.693 kb on + strandat 3219.701 kb on - strandat 3219.943 kb on + strand, within Dshi_3051at 3219.951 kb on - strand, within Dshi_3051

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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3,217,675 + Dshi_3049 0.33 -2.0
3,217,722 + Dshi_3049 0.38 +3.0
3,217,804 - Dshi_3049 0.46 +0.1
3,217,811 + Dshi_3049 0.47 +0.0
3,218,000 - Dshi_3049 0.67 +2.8
3,218,057 - Dshi_3049 0.73 -2.3
3,218,070 + Dshi_3049 0.75 +0.4
3,218,078 - Dshi_3049 0.75 -1.2
3,218,180 - Dshi_3049 0.86 -0.4
3,218,361 + +1.4
3,218,435 - +1.4
3,218,656 + Dshi_3050 0.11 -1.9
3,218,656 + Dshi_3050 0.11 -3.1
3,218,664 - Dshi_3050 0.12 -0.6
3,218,932 + Dshi_3050 0.40 -1.1
3,219,106 - Dshi_3050 0.58 -0.9
3,219,117 + Dshi_3050 0.59 -1.1
3,219,150 - Dshi_3050 0.62 +4.0
3,219,301 - Dshi_3050 0.78 -0.6
3,219,353 - Dshi_3050 0.84 -1.6
3,219,491 - +2.0
3,219,666 - +1.1
3,219,667 - +0.8
3,219,693 + -0.4
3,219,701 - +0.5
3,219,943 + Dshi_3051 0.45 -2.4
3,219,951 - Dshi_3051 0.47 -0.2

Or see this region's nucleotide sequence