Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2979 and Dshi_2980 overlap by 4 nucleotides Dshi_2980 and Dshi_2981 are separated by 175 nucleotides Dshi_2981 and Dshi_2982 are separated by 74 nucleotides Dshi_2982 and Dshi_2983 are separated by 63 nucleotides
Dshi_2979: Dshi_2979 - Adenosylcobinamide-phosphateguanylyltransferase (RefSeq), at 3,146,213 to 3,146,737
_2979
Dshi_2980: Dshi_2980 - Phosphoglycerate mutase (RefSeq), at 3,146,734 to 3,147,306
_2980
Dshi_2981: Dshi_2981 - Sulfite oxidase (RefSeq), at 3,147,482 to 3,148,744
_2981
Dshi_2982: Dshi_2982 - hypothetical protein (RefSeq), at 3,148,819 to 3,149,169
_2982
Dshi_2983: Dshi_2983 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 3,149,233 to 3,150,231
_2983
Position (kb)
3147
3148
3149 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3146.740 kb on - strand at 3146.744 kb on - strand at 3146.751 kb on - strand at 3147.381 kb on + strand at 3147.507 kb on - strand at 3147.578 kb on - strand at 3147.578 kb on - strand at 3147.583 kb on - strand at 3147.753 kb on - strand, within Dshi_2981 at 3147.828 kb on - strand, within Dshi_2981 at 3147.899 kb on + strand, within Dshi_2981 at 3147.907 kb on - strand, within Dshi_2981 at 3147.914 kb on - strand, within Dshi_2981 at 3148.054 kb on + strand, within Dshi_2981 at 3148.063 kb on + strand, within Dshi_2981 at 3148.184 kb on - strand, within Dshi_2981 at 3148.327 kb on + strand, within Dshi_2981 at 3148.327 kb on + strand, within Dshi_2981 at 3148.327 kb on + strand, within Dshi_2981 at 3148.327 kb on + strand, within Dshi_2981 at 3148.335 kb on - strand, within Dshi_2981 at 3148.396 kb on - strand, within Dshi_2981 at 3148.397 kb on + strand, within Dshi_2981 at 3148.448 kb on - strand, within Dshi_2981 at 3148.473 kb on + strand, within Dshi_2981 at 3148.581 kb on + strand, within Dshi_2981 at 3148.608 kb on - strand, within Dshi_2981 at 3148.713 kb on - strand at 3148.722 kb on + strand at 3148.751 kb on - strand at 3148.751 kb on - strand at 3148.772 kb on - strand at 3148.782 kb on - strand at 3148.882 kb on + strand, within Dshi_2982 at 3148.882 kb on + strand, within Dshi_2982 at 3149.019 kb on + strand, within Dshi_2982 at 3149.147 kb on + strand at 3149.158 kb on + strand at 3149.171 kb on - strand at 3149.218 kb on + strand at 3149.226 kb on - strand at 3149.310 kb on - strand at 3149.361 kb on - strand, within Dshi_2983 at 3149.427 kb on + strand, within Dshi_2983 at 3149.466 kb on + strand, within Dshi_2983 at 3149.535 kb on - strand, within Dshi_2983 at 3149.554 kb on + strand, within Dshi_2983 at 3149.584 kb on + strand, within Dshi_2983 at 3149.652 kb on - strand, within Dshi_2983 at 3149.659 kb on + strand, within Dshi_2983
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 3,146,740 - -2.7 3,146,744 - -0.0 3,146,751 - -0.7 3,147,381 + -2.5 3,147,507 - +3.4 3,147,578 - -1.5 3,147,578 - +3.2 3,147,583 - +0.4 3,147,753 - Dshi_2981 0.21 -1.1 3,147,828 - Dshi_2981 0.27 -0.6 3,147,899 + Dshi_2981 0.33 +3.2 3,147,907 - Dshi_2981 0.34 +0.1 3,147,914 - Dshi_2981 0.34 -3.1 3,148,054 + Dshi_2981 0.45 +0.2 3,148,063 + Dshi_2981 0.46 +0.0 3,148,184 - Dshi_2981 0.56 -1.9 3,148,327 + Dshi_2981 0.67 +1.8 3,148,327 + Dshi_2981 0.67 +0.0 3,148,327 + Dshi_2981 0.67 -2.9 3,148,327 + Dshi_2981 0.67 +0.3 3,148,335 - Dshi_2981 0.68 +0.1 3,148,396 - Dshi_2981 0.72 +2.4 3,148,397 + Dshi_2981 0.72 -3.3 3,148,448 - Dshi_2981 0.76 -1.1 3,148,473 + Dshi_2981 0.78 -1.8 3,148,581 + Dshi_2981 0.87 +1.9 3,148,608 - Dshi_2981 0.89 +0.3 3,148,713 - +0.2 3,148,722 + +0.4 3,148,751 - +2.4 3,148,751 - -1.1 3,148,772 - +1.5 3,148,782 - +0.4 3,148,882 + Dshi_2982 0.18 +3.4 3,148,882 + Dshi_2982 0.18 +2.0 3,149,019 + Dshi_2982 0.57 +0.6 3,149,147 + -0.6 3,149,158 + +1.4 3,149,171 - -0.1 3,149,218 + +1.4 3,149,226 - -2.1 3,149,310 - +1.4 3,149,361 - Dshi_2983 0.13 +0.1 3,149,427 + Dshi_2983 0.19 -0.6 3,149,466 + Dshi_2983 0.23 -1.2 3,149,535 - Dshi_2983 0.30 +2.0 3,149,554 + Dshi_2983 0.32 +0.4 3,149,584 + Dshi_2983 0.35 -1.1 3,149,652 - Dshi_2983 0.42 +0.0 3,149,659 + Dshi_2983 0.43 -1.6
Or see this region's nucleotide sequence