Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2958 and Dshi_2959 overlap by 4 nucleotides Dshi_2959 and Dshi_2960 overlap by 4 nucleotides Dshi_2960 and Dshi_2961 overlap by 4 nucleotides
Dshi_2958: Dshi_2958 - Xanthine dehydrogenase (EC 1.17.1.4) (from data) , at 3,121,712 to 3,123,163
_2958
Dshi_2959: Dshi_2959 - Xanthine dehydrogenase (EC 1.17.1.4) (from data) , at 3,123,160 to 3,125,505
_2959
Dshi_2960: Dshi_2960 - Xanthine dehydrogenase accessory protein XdhC (RefSeq), at 3,125,502 to 3,126,464
_2960
Dshi_2961: Dshi_2961 - ABC transporter related (RefSeq), at 3,126,461 to 3,127,996
_2961
Position (kb)
3123
3124
3125
3126 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3122.164 kb on - strand, within Dshi_2958 at 3122.184 kb on + strand, within Dshi_2958 at 3122.303 kb on + strand, within Dshi_2958 at 3122.343 kb on + strand, within Dshi_2958 at 3122.404 kb on + strand, within Dshi_2958 at 3122.472 kb on - strand, within Dshi_2958 at 3122.498 kb on - strand, within Dshi_2958 at 3122.538 kb on - strand, within Dshi_2958 at 3122.685 kb on + strand, within Dshi_2958 at 3122.687 kb on - strand, within Dshi_2958 at 3122.687 kb on - strand, within Dshi_2958 at 3122.687 kb on - strand, within Dshi_2958 at 3122.695 kb on + strand, within Dshi_2958 at 3122.703 kb on - strand, within Dshi_2958 at 3122.710 kb on - strand, within Dshi_2958 at 3122.880 kb on + strand, within Dshi_2958 at 3122.953 kb on + strand, within Dshi_2958 at 3122.980 kb on - strand, within Dshi_2958 at 3122.980 kb on - strand, within Dshi_2958 at 3123.001 kb on + strand, within Dshi_2958 at 3123.079 kb on + strand at 3123.235 kb on + strand at 3123.260 kb on + strand at 3123.266 kb on + strand at 3123.405 kb on - strand, within Dshi_2959 at 3123.425 kb on - strand, within Dshi_2959 at 3123.437 kb on + strand, within Dshi_2959 at 3123.486 kb on + strand, within Dshi_2959 at 3123.599 kb on - strand, within Dshi_2959 at 3123.611 kb on - strand, within Dshi_2959 at 3123.633 kb on + strand, within Dshi_2959 at 3123.691 kb on + strand, within Dshi_2959 at 3123.823 kb on - strand, within Dshi_2959 at 3123.859 kb on + strand, within Dshi_2959 at 3123.871 kb on + strand, within Dshi_2959 at 3124.168 kb on - strand, within Dshi_2959 at 3124.168 kb on - strand, within Dshi_2959 at 3124.170 kb on + strand, within Dshi_2959 at 3124.170 kb on + strand, within Dshi_2959 at 3124.264 kb on - strand, within Dshi_2959 at 3124.377 kb on - strand, within Dshi_2959 at 3124.388 kb on + strand, within Dshi_2959 at 3124.516 kb on + strand, within Dshi_2959 at 3124.554 kb on + strand, within Dshi_2959 at 3124.577 kb on - strand, within Dshi_2959 at 3124.587 kb on + strand, within Dshi_2959 at 3124.596 kb on - strand, within Dshi_2959 at 3124.609 kb on + strand, within Dshi_2959 at 3124.647 kb on + strand, within Dshi_2959 at 3124.952 kb on - strand, within Dshi_2959 at 3124.979 kb on - strand, within Dshi_2959 at 3124.982 kb on + strand, within Dshi_2959 at 3124.991 kb on - strand, within Dshi_2959 at 3125.004 kb on + strand, within Dshi_2959 at 3125.012 kb on - strand, within Dshi_2959 at 3125.050 kb on + strand, within Dshi_2959 at 3125.053 kb on - strand, within Dshi_2959 at 3125.171 kb on + strand, within Dshi_2959 at 3125.171 kb on + strand, within Dshi_2959 at 3125.219 kb on - strand, within Dshi_2959 at 3125.438 kb on + strand at 3125.448 kb on + strand at 3125.750 kb on - strand, within Dshi_2960 at 3125.766 kb on + strand, within Dshi_2960 at 3125.813 kb on + strand, within Dshi_2960 at 3125.965 kb on + strand, within Dshi_2960 at 3125.997 kb on + strand, within Dshi_2960 at 3126.056 kb on + strand, within Dshi_2960 at 3126.057 kb on + strand, within Dshi_2960 at 3126.172 kb on + strand, within Dshi_2960 at 3126.239 kb on + strand, within Dshi_2960 at 3126.373 kb on + strand at 3126.434 kb on + strand at 3126.490 kb on + strand at 3126.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 3,122,164 - Dshi_2958 0.31 -1.4 3,122,184 + Dshi_2958 0.33 -2.1 3,122,303 + Dshi_2958 0.41 -1.1 3,122,343 + Dshi_2958 0.43 +0.5 3,122,404 + Dshi_2958 0.48 -1.1 3,122,472 - Dshi_2958 0.52 +2.8 3,122,498 - Dshi_2958 0.54 -0.7 3,122,538 - Dshi_2958 0.57 -0.5 3,122,685 + Dshi_2958 0.67 -2.1 3,122,687 - Dshi_2958 0.67 +0.2 3,122,687 - Dshi_2958 0.67 +0.5 3,122,687 - Dshi_2958 0.67 -0.4 3,122,695 + Dshi_2958 0.68 -0.4 3,122,703 - Dshi_2958 0.68 -1.6 3,122,710 - Dshi_2958 0.69 -0.5 3,122,880 + Dshi_2958 0.80 +2.0 3,122,953 + Dshi_2958 0.85 -0.7 3,122,980 - Dshi_2958 0.87 -1.0 3,122,980 - Dshi_2958 0.87 -0.9 3,123,001 + Dshi_2958 0.89 +0.7 3,123,079 + -1.0 3,123,235 + +0.9 3,123,260 + -1.1 3,123,266 + -1.5 3,123,405 - Dshi_2959 0.10 -0.2 3,123,425 - Dshi_2959 0.11 +3.5 3,123,437 + Dshi_2959 0.12 -0.6 3,123,486 + Dshi_2959 0.14 +0.5 3,123,599 - Dshi_2959 0.19 -0.1 3,123,611 - Dshi_2959 0.19 -2.5 3,123,633 + Dshi_2959 0.20 -1.1 3,123,691 + Dshi_2959 0.23 -1.9 3,123,823 - Dshi_2959 0.28 +0.1 3,123,859 + Dshi_2959 0.30 -0.8 3,123,871 + Dshi_2959 0.30 +1.1 3,124,168 - Dshi_2959 0.43 -3.2 3,124,168 - Dshi_2959 0.43 +1.1 3,124,170 + Dshi_2959 0.43 -0.8 3,124,170 + Dshi_2959 0.43 +2.5 3,124,264 - Dshi_2959 0.47 -0.2 3,124,377 - Dshi_2959 0.52 +0.7 3,124,388 + Dshi_2959 0.52 -0.8 3,124,516 + Dshi_2959 0.58 +0.5 3,124,554 + Dshi_2959 0.59 +2.0 3,124,577 - Dshi_2959 0.60 -1.4 3,124,587 + Dshi_2959 0.61 -2.0 3,124,596 - Dshi_2959 0.61 -1.1 3,124,609 + Dshi_2959 0.62 -0.5 3,124,647 + Dshi_2959 0.63 -1.2 3,124,952 - Dshi_2959 0.76 +0.3 3,124,979 - Dshi_2959 0.78 -0.5 3,124,982 + Dshi_2959 0.78 +3.0 3,124,991 - Dshi_2959 0.78 +2.2 3,125,004 + Dshi_2959 0.79 +2.5 3,125,012 - Dshi_2959 0.79 +0.1 3,125,050 + Dshi_2959 0.81 +0.5 3,125,053 - Dshi_2959 0.81 +0.7 3,125,171 + Dshi_2959 0.86 +1.4 3,125,171 + Dshi_2959 0.86 +0.4 3,125,219 - Dshi_2959 0.88 -1.3 3,125,438 + +0.4 3,125,448 + -1.9 3,125,750 - Dshi_2960 0.26 -2.4 3,125,766 + Dshi_2960 0.27 -0.6 3,125,813 + Dshi_2960 0.32 +0.4 3,125,965 + Dshi_2960 0.48 -3.9 3,125,997 + Dshi_2960 0.51 +0.2 3,126,056 + Dshi_2960 0.58 +2.4 3,126,057 + Dshi_2960 0.58 +1.0 3,126,172 + Dshi_2960 0.70 -0.6 3,126,239 + Dshi_2960 0.77 -0.6 3,126,373 + -1.5 3,126,434 + +0.9 3,126,490 + +0.0 3,126,504 - -2.6
Or see this region's nucleotide sequence