Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2828

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2826 and Dshi_2827 are separated by 37 nucleotidesDshi_2827 and Dshi_2828 are separated by 92 nucleotidesDshi_2828 and Dshi_2829 overlap by 4 nucleotides Dshi_2826: Dshi_2826 - hypothetical protein (RefSeq), at 2,982,421 to 2,983,074 _2826 Dshi_2827: Dshi_2827 - YceI family protein (RefSeq), at 2,983,112 to 2,983,675 _2827 Dshi_2828: Dshi_2828 - Mg chelatase, subunit ChlI (RefSeq), at 2,983,768 to 2,985,282 _2828 Dshi_2829: Dshi_2829 - glutathione synthetase (RefSeq), at 2,985,279 to 2,986,226 _2829 Position (kb) 2983 2984 2985 2986Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2983.100 kb on - strandat 2983.102 kb on + strandat 2983.110 kb on - strandat 2983.317 kb on + strandat 2983.325 kb on - strand, within Dshi_2827at 2983.382 kb on - strand, within Dshi_2827at 2983.538 kb on + strand, within Dshi_2827at 2983.570 kb on + strand, within Dshi_2827at 2983.601 kb on - strand, within Dshi_2827at 2983.608 kb on + strand, within Dshi_2827at 2983.737 kb on + strandat 2983.756 kb on - strandat 2983.969 kb on - strand, within Dshi_2828at 2983.976 kb on + strand, within Dshi_2828at 2984.312 kb on - strand, within Dshi_2828at 2984.477 kb on + strand, within Dshi_2828at 2984.582 kb on + strand, within Dshi_2828at 2984.710 kb on - strand, within Dshi_2828at 2984.714 kb on - strand, within Dshi_2828at 2984.758 kb on - strand, within Dshi_2828at 2984.893 kb on + strand, within Dshi_2828at 2984.997 kb on - strand, within Dshi_2828at 2985.063 kb on + strand, within Dshi_2828at 2985.086 kb on - strand, within Dshi_2828at 2985.148 kb on - strandat 2985.174 kb on + strandat 2985.200 kb on + strandat 2985.209 kb on + strandat 2985.315 kb on + strandat 2986.144 kb on - strandat 2986.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,983,100 - -0.1
2,983,102 + -2.0
2,983,110 - +1.9
2,983,317 + +0.5
2,983,325 - Dshi_2827 0.38 -1.1
2,983,382 - Dshi_2827 0.48 +0.5
2,983,538 + Dshi_2827 0.76 +4.3
2,983,570 + Dshi_2827 0.81 +0.5
2,983,601 - Dshi_2827 0.87 -3.3
2,983,608 + Dshi_2827 0.88 -3.1
2,983,737 + -0.8
2,983,756 - +0.5
2,983,969 - Dshi_2828 0.13 -0.0
2,983,976 + Dshi_2828 0.14 +0.5
2,984,312 - Dshi_2828 0.36 +1.1
2,984,477 + Dshi_2828 0.47 -1.1
2,984,582 + Dshi_2828 0.54 +0.5
2,984,710 - Dshi_2828 0.62 -1.3
2,984,714 - Dshi_2828 0.62 -2.8
2,984,758 - Dshi_2828 0.65 -0.5
2,984,893 + Dshi_2828 0.74 +1.5
2,984,997 - Dshi_2828 0.81 +3.1
2,985,063 + Dshi_2828 0.85 -2.1
2,985,086 - Dshi_2828 0.87 +1.5
2,985,148 - +3.3
2,985,174 + -1.4
2,985,200 + +3.1
2,985,209 + -1.7
2,985,315 + +1.0
2,986,144 - -0.0
2,986,208 - -2.5

Or see this region's nucleotide sequence