Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2815

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2814 and Dshi_2815 overlap by 4 nucleotidesDshi_2815 and Dshi_2816 are separated by 101 nucleotides Dshi_2814: Dshi_2814 - diguanylate cyclase (RefSeq), at 2,969,763 to 2,970,803 _2814 Dshi_2815: Dshi_2815 - Heme NO binding domain protein (RefSeq), at 2,970,800 to 2,971,384 _2815 Dshi_2816: Dshi_2816 - hypothetical protein (RefSeq), at 2,971,486 to 2,973,201 _2816 Position (kb) 2970 2971 2972Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2969.815 kb on + strandat 2969.846 kb on - strandat 2969.846 kb on - strandat 2969.847 kb on + strandat 2969.847 kb on + strandat 2969.964 kb on + strand, within Dshi_2814at 2970.104 kb on + strand, within Dshi_2814at 2970.115 kb on + strand, within Dshi_2814at 2970.123 kb on - strand, within Dshi_2814at 2970.282 kb on + strand, within Dshi_2814at 2970.286 kb on - strand, within Dshi_2814at 2970.286 kb on - strand, within Dshi_2814at 2970.318 kb on - strand, within Dshi_2814at 2970.552 kb on - strand, within Dshi_2814at 2970.552 kb on - strand, within Dshi_2814at 2970.607 kb on - strand, within Dshi_2814at 2970.607 kb on - strand, within Dshi_2814at 2970.622 kb on + strand, within Dshi_2814at 2970.768 kb on + strandat 2970.867 kb on - strand, within Dshi_2815at 2970.871 kb on + strand, within Dshi_2815at 2970.879 kb on - strand, within Dshi_2815at 2970.879 kb on - strand, within Dshi_2815at 2970.984 kb on + strand, within Dshi_2815at 2971.135 kb on + strand, within Dshi_2815at 2971.270 kb on - strand, within Dshi_2815at 2971.348 kb on + strandat 2971.356 kb on - strandat 2971.427 kb on - strandat 2971.490 kb on - strandat 2971.535 kb on - strandat 2971.614 kb on + strandat 2971.821 kb on - strand, within Dshi_2816at 2971.832 kb on - strand, within Dshi_2816at 2971.837 kb on - strand, within Dshi_2816at 2971.997 kb on - strand, within Dshi_2816at 2972.012 kb on - strand, within Dshi_2816at 2972.014 kb on - strand, within Dshi_2816at 2972.068 kb on - strand, within Dshi_2816at 2972.068 kb on - strand, within Dshi_2816at 2972.115 kb on + strand, within Dshi_2816at 2972.119 kb on + strand, within Dshi_2816at 2972.208 kb on - strand, within Dshi_2816at 2972.226 kb on + strand, within Dshi_2816at 2972.277 kb on - strand, within Dshi_2816at 2972.310 kb on - strand, within Dshi_2816

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,969,815 + +2.5
2,969,846 - +0.5
2,969,846 - +0.5
2,969,847 + -0.4
2,969,847 + -0.3
2,969,964 + Dshi_2814 0.19 +0.5
2,970,104 + Dshi_2814 0.33 +0.5
2,970,115 + Dshi_2814 0.34 -0.7
2,970,123 - Dshi_2814 0.35 +0.5
2,970,282 + Dshi_2814 0.50 -0.9
2,970,286 - Dshi_2814 0.50 -1.0
2,970,286 - Dshi_2814 0.50 -1.0
2,970,318 - Dshi_2814 0.53 -1.5
2,970,552 - Dshi_2814 0.76 -0.5
2,970,552 - Dshi_2814 0.76 +2.8
2,970,607 - Dshi_2814 0.81 +1.5
2,970,607 - Dshi_2814 0.81 +0.2
2,970,622 + Dshi_2814 0.83 +2.0
2,970,768 + -2.5
2,970,867 - Dshi_2815 0.11 -1.1
2,970,871 + Dshi_2815 0.12 +2.3
2,970,879 - Dshi_2815 0.14 -0.9
2,970,879 - Dshi_2815 0.14 -1.7
2,970,984 + Dshi_2815 0.31 +2.0
2,971,135 + Dshi_2815 0.57 -3.0
2,971,270 - Dshi_2815 0.80 +0.2
2,971,348 + -1.1
2,971,356 - -0.8
2,971,427 - +2.8
2,971,490 - -1.1
2,971,535 - +0.2
2,971,614 + -1.5
2,971,821 - Dshi_2816 0.20 -0.2
2,971,832 - Dshi_2816 0.20 +1.3
2,971,837 - Dshi_2816 0.20 +2.0
2,971,997 - Dshi_2816 0.30 +1.5
2,972,012 - Dshi_2816 0.31 +0.2
2,972,014 - Dshi_2816 0.31 -1.1
2,972,068 - Dshi_2816 0.34 -2.7
2,972,068 - Dshi_2816 0.34 +0.7
2,972,115 + Dshi_2816 0.37 +0.5
2,972,119 + Dshi_2816 0.37 +0.4
2,972,208 - Dshi_2816 0.42 -0.5
2,972,226 + Dshi_2816 0.43 +2.2
2,972,277 - Dshi_2816 0.46 +0.5
2,972,310 - Dshi_2816 0.48 -1.1

Or see this region's nucleotide sequence