Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2738

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2737 and Dshi_2738 are separated by 45 nucleotidesDshi_2738 and Dshi_2739 are separated by 105 nucleotidesDshi_2739 and Dshi_2740 are separated by 142 nucleotides Dshi_2737: Dshi_2737 - pyridine nucleotide-disulphide oxidoreductase dimerisation region (RefSeq), at 2,898,349 to 2,899,800 _2737 Dshi_2738: Dshi_2738 - ribose 5-phosphate isomerase (RefSeq), at 2,899,846 to 2,900,628 _2738 Dshi_2739: Dshi_2739 - thiamine pyrophosphokinase (RefSeq), at 2,900,734 to 2,901,423 _2739 Dshi_2740: Dshi_2740 - putative CheA signal transduction histidine kinase (RefSeq), at 2,901,566 to 2,903,512 _2740 Position (kb) 2899 2900 2901Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2898.862 kb on - strand, within Dshi_2737at 2898.872 kb on + strand, within Dshi_2737at 2898.880 kb on - strand, within Dshi_2737at 2898.915 kb on + strand, within Dshi_2737at 2899.068 kb on - strand, within Dshi_2737at 2899.073 kb on - strand, within Dshi_2737at 2899.194 kb on - strand, within Dshi_2737at 2899.238 kb on - strand, within Dshi_2737at 2899.290 kb on + strand, within Dshi_2737at 2899.293 kb on - strand, within Dshi_2737at 2899.307 kb on - strand, within Dshi_2737at 2899.326 kb on + strand, within Dshi_2737at 2899.362 kb on - strand, within Dshi_2737at 2899.373 kb on + strand, within Dshi_2737at 2899.409 kb on + strandat 2899.490 kb on + strand, within Dshi_2737at 2899.498 kb on - strand, within Dshi_2737at 2899.498 kb on - strand, within Dshi_2737at 2899.505 kb on + strand, within Dshi_2737at 2899.505 kb on + strand, within Dshi_2737at 2899.588 kb on - strand, within Dshi_2737at 2899.686 kb on - strandat 2899.790 kb on - strandat 2899.808 kb on + strandat 2899.815 kb on - strandat 2899.937 kb on - strand, within Dshi_2738at 2900.636 kb on + strandat 2900.636 kb on + strandat 2900.637 kb on + strandat 2900.678 kb on - strandat 2900.681 kb on + strandat 2901.462 kb on + strandat 2901.462 kb on + strandat 2901.482 kb on - strandat 2901.534 kb on - strandat 2901.538 kb on + strandat 2901.538 kb on + strandat 2901.538 kb on + strandat 2901.538 kb on + strandat 2901.538 kb on + strandat 2901.538 kb on + strandat 2901.547 kb on - strandat 2901.547 kb on - strandat 2901.550 kb on + strandat 2901.550 kb on + strandat 2901.551 kb on + strandat 2901.554 kb on - strandat 2901.561 kb on + strandat 2901.567 kb on + strandat 2901.567 kb on + strandat 2901.567 kb on + strandat 2901.569 kb on - strandat 2901.575 kb on - strandat 2901.577 kb on + strandat 2901.577 kb on + strandat 2901.577 kb on + strandat 2901.583 kb on + strandat 2901.601 kb on - strandat 2901.620 kb on + strandat 2901.620 kb on + strandat 2901.620 kb on + strandat 2901.628 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,898,862 - Dshi_2737 0.35 -0.4
2,898,872 + Dshi_2737 0.36 +3.2
2,898,880 - Dshi_2737 0.37 -0.0
2,898,915 + Dshi_2737 0.39 +2.4
2,899,068 - Dshi_2737 0.50 +0.2
2,899,073 - Dshi_2737 0.50 -0.9
2,899,194 - Dshi_2737 0.58 -0.8
2,899,238 - Dshi_2737 0.61 +0.1
2,899,290 + Dshi_2737 0.65 -0.7
2,899,293 - Dshi_2737 0.65 -0.1
2,899,307 - Dshi_2737 0.66 -1.1
2,899,326 + Dshi_2737 0.67 -0.1
2,899,362 - Dshi_2737 0.70 +0.1
2,899,373 + Dshi_2737 0.71 -1.9
2,899,409 + +0.4
2,899,490 + Dshi_2737 0.79 -1.0
2,899,498 - Dshi_2737 0.79 -0.7
2,899,498 - Dshi_2737 0.79 +0.6
2,899,505 + Dshi_2737 0.80 +1.1
2,899,505 + Dshi_2737 0.80 +0.5
2,899,588 - Dshi_2737 0.85 +0.1
2,899,686 - +1.2
2,899,790 - +0.2
2,899,808 + +0.2
2,899,815 - -0.5
2,899,937 - Dshi_2738 0.12 +0.1
2,900,636 + +0.6
2,900,636 + -1.6
2,900,637 + -0.3
2,900,678 - +0.2
2,900,681 + +0.0
2,901,462 + -0.4
2,901,462 + +2.0
2,901,482 - +3.0
2,901,534 - -0.6
2,901,538 + -0.3
2,901,538 + -0.4
2,901,538 + +2.2
2,901,538 + +0.8
2,901,538 + +3.2
2,901,538 + +0.2
2,901,547 - +0.1
2,901,547 - +2.0
2,901,550 + +2.9
2,901,550 + -1.6
2,901,551 + +1.4
2,901,554 - +0.1
2,901,561 + -0.6
2,901,567 + -1.0
2,901,567 + -2.2
2,901,567 + +1.2
2,901,569 - -0.8
2,901,575 - +2.2
2,901,577 + -1.2
2,901,577 + +1.4
2,901,577 + -0.7
2,901,583 + -0.8
2,901,601 - -0.2
2,901,620 + -0.3
2,901,620 + -1.0
2,901,620 + +0.0
2,901,628 - +0.5

Or see this region's nucleotide sequence