Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2736 and Dshi_2737 are separated by 66 nucleotides Dshi_2737 and Dshi_2738 are separated by 45 nucleotides Dshi_2738 and Dshi_2739 are separated by 105 nucleotides
Dshi_2736: Dshi_2736 - HflK protein (RefSeq), at 2,897,134 to 2,898,282
_2736
Dshi_2737: Dshi_2737 - pyridine nucleotide-disulphide oxidoreductase dimerisation region (RefSeq), at 2,898,349 to 2,899,800
_2737
Dshi_2738: Dshi_2738 - ribose 5-phosphate isomerase (RefSeq), at 2,899,846 to 2,900,628
_2738
Dshi_2739: Dshi_2739 - thiamine pyrophosphokinase (RefSeq), at 2,900,734 to 2,901,423
_2739
Position (kb)
2898
2899
2900 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2897.372 kb on + strand, within Dshi_2736 at 2897.399 kb on + strand, within Dshi_2736 at 2897.520 kb on + strand, within Dshi_2736 at 2897.525 kb on + strand, within Dshi_2736 at 2897.587 kb on + strand, within Dshi_2736 at 2897.662 kb on - strand, within Dshi_2736 at 2897.688 kb on - strand, within Dshi_2736 at 2897.700 kb on + strand, within Dshi_2736 at 2897.807 kb on - strand, within Dshi_2736 at 2897.885 kb on - strand, within Dshi_2736 at 2897.916 kb on - strand, within Dshi_2736 at 2898.006 kb on + strand, within Dshi_2736 at 2898.104 kb on + strand, within Dshi_2736 at 2898.226 kb on - strand at 2898.327 kb on - strand at 2898.327 kb on - strand at 2898.410 kb on + strand at 2898.410 kb on + strand at 2898.418 kb on - strand at 2898.418 kb on - strand at 2898.418 kb on - strand at 2898.516 kb on - strand, within Dshi_2737 at 2898.598 kb on - strand, within Dshi_2737 at 2898.636 kb on + strand, within Dshi_2737 at 2898.674 kb on - strand, within Dshi_2737 at 2898.862 kb on - strand, within Dshi_2737 at 2898.872 kb on + strand, within Dshi_2737 at 2898.880 kb on - strand, within Dshi_2737 at 2898.915 kb on + strand, within Dshi_2737 at 2899.068 kb on - strand, within Dshi_2737 at 2899.073 kb on - strand, within Dshi_2737 at 2899.194 kb on - strand, within Dshi_2737 at 2899.238 kb on - strand, within Dshi_2737 at 2899.290 kb on + strand, within Dshi_2737 at 2899.293 kb on - strand, within Dshi_2737 at 2899.307 kb on - strand, within Dshi_2737 at 2899.326 kb on + strand, within Dshi_2737 at 2899.362 kb on - strand, within Dshi_2737 at 2899.373 kb on + strand, within Dshi_2737 at 2899.409 kb on + strand at 2899.490 kb on + strand, within Dshi_2737 at 2899.498 kb on - strand, within Dshi_2737 at 2899.498 kb on - strand, within Dshi_2737 at 2899.505 kb on + strand, within Dshi_2737 at 2899.505 kb on + strand, within Dshi_2737 at 2899.588 kb on - strand, within Dshi_2737 at 2899.686 kb on - strand at 2899.790 kb on - strand at 2899.808 kb on + strand at 2899.815 kb on - strand at 2899.937 kb on - strand, within Dshi_2738 at 2900.636 kb on + strand at 2900.636 kb on + strand at 2900.637 kb on + strand at 2900.678 kb on - strand at 2900.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 2,897,372 + Dshi_2736 0.21 -2.9 2,897,399 + Dshi_2736 0.23 -2.6 2,897,520 + Dshi_2736 0.34 -2.4 2,897,525 + Dshi_2736 0.34 -0.6 2,897,587 + Dshi_2736 0.39 +3.2 2,897,662 - Dshi_2736 0.46 -0.8 2,897,688 - Dshi_2736 0.48 +1.8 2,897,700 + Dshi_2736 0.49 -2.2 2,897,807 - Dshi_2736 0.59 -0.8 2,897,885 - Dshi_2736 0.65 +0.7 2,897,916 - Dshi_2736 0.68 +0.1 2,898,006 + Dshi_2736 0.76 -0.9 2,898,104 + Dshi_2736 0.84 -2.4 2,898,226 - -2.2 2,898,327 - -0.1 2,898,327 - -2.1 2,898,410 + +0.8 2,898,410 + +0.0 2,898,418 - -1.4 2,898,418 - -0.5 2,898,418 - -0.6 2,898,516 - Dshi_2737 0.12 +1.8 2,898,598 - Dshi_2737 0.17 -0.2 2,898,636 + Dshi_2737 0.20 -0.0 2,898,674 - Dshi_2737 0.22 -2.2 2,898,862 - Dshi_2737 0.35 -0.4 2,898,872 + Dshi_2737 0.36 +3.2 2,898,880 - Dshi_2737 0.37 -0.0 2,898,915 + Dshi_2737 0.39 +2.4 2,899,068 - Dshi_2737 0.50 +0.2 2,899,073 - Dshi_2737 0.50 -0.9 2,899,194 - Dshi_2737 0.58 -0.8 2,899,238 - Dshi_2737 0.61 +0.1 2,899,290 + Dshi_2737 0.65 -0.7 2,899,293 - Dshi_2737 0.65 -0.1 2,899,307 - Dshi_2737 0.66 -1.1 2,899,326 + Dshi_2737 0.67 -0.1 2,899,362 - Dshi_2737 0.70 +0.1 2,899,373 + Dshi_2737 0.71 -1.9 2,899,409 + +0.4 2,899,490 + Dshi_2737 0.79 -1.0 2,899,498 - Dshi_2737 0.79 -0.7 2,899,498 - Dshi_2737 0.79 +0.6 2,899,505 + Dshi_2737 0.80 +1.1 2,899,505 + Dshi_2737 0.80 +0.5 2,899,588 - Dshi_2737 0.85 +0.1 2,899,686 - +1.2 2,899,790 - +0.2 2,899,808 + +0.2 2,899,815 - -0.5 2,899,937 - Dshi_2738 0.12 +0.1 2,900,636 + +0.6 2,900,636 + -1.6 2,900,637 + -0.3 2,900,678 - +0.2 2,900,681 + +0.0
Or see this region's nucleotide sequence