Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2737

Experiment: m.b. Chlorite 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2736 and Dshi_2737 are separated by 66 nucleotidesDshi_2737 and Dshi_2738 are separated by 45 nucleotidesDshi_2738 and Dshi_2739 are separated by 105 nucleotides Dshi_2736: Dshi_2736 - HflK protein (RefSeq), at 2,897,134 to 2,898,282 _2736 Dshi_2737: Dshi_2737 - pyridine nucleotide-disulphide oxidoreductase dimerisation region (RefSeq), at 2,898,349 to 2,899,800 _2737 Dshi_2738: Dshi_2738 - ribose 5-phosphate isomerase (RefSeq), at 2,899,846 to 2,900,628 _2738 Dshi_2739: Dshi_2739 - thiamine pyrophosphokinase (RefSeq), at 2,900,734 to 2,901,423 _2739 Position (kb) 2898 2899 2900Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2897.372 kb on + strand, within Dshi_2736at 2897.399 kb on + strand, within Dshi_2736at 2897.520 kb on + strand, within Dshi_2736at 2897.525 kb on + strand, within Dshi_2736at 2897.587 kb on + strand, within Dshi_2736at 2897.662 kb on - strand, within Dshi_2736at 2897.688 kb on - strand, within Dshi_2736at 2897.700 kb on + strand, within Dshi_2736at 2897.807 kb on - strand, within Dshi_2736at 2897.885 kb on - strand, within Dshi_2736at 2897.916 kb on - strand, within Dshi_2736at 2898.006 kb on + strand, within Dshi_2736at 2898.104 kb on + strand, within Dshi_2736at 2898.226 kb on - strandat 2898.327 kb on - strandat 2898.327 kb on - strandat 2898.410 kb on + strandat 2898.410 kb on + strandat 2898.418 kb on - strandat 2898.418 kb on - strandat 2898.418 kb on - strandat 2898.516 kb on - strand, within Dshi_2737at 2898.598 kb on - strand, within Dshi_2737at 2898.636 kb on + strand, within Dshi_2737at 2898.674 kb on - strand, within Dshi_2737at 2898.862 kb on - strand, within Dshi_2737at 2898.872 kb on + strand, within Dshi_2737at 2898.880 kb on - strand, within Dshi_2737at 2898.915 kb on + strand, within Dshi_2737at 2899.068 kb on - strand, within Dshi_2737at 2899.073 kb on - strand, within Dshi_2737at 2899.194 kb on - strand, within Dshi_2737at 2899.238 kb on - strand, within Dshi_2737at 2899.290 kb on + strand, within Dshi_2737at 2899.293 kb on - strand, within Dshi_2737at 2899.307 kb on - strand, within Dshi_2737at 2899.326 kb on + strand, within Dshi_2737at 2899.362 kb on - strand, within Dshi_2737at 2899.373 kb on + strand, within Dshi_2737at 2899.409 kb on + strandat 2899.490 kb on + strand, within Dshi_2737at 2899.498 kb on - strand, within Dshi_2737at 2899.498 kb on - strand, within Dshi_2737at 2899.505 kb on + strand, within Dshi_2737at 2899.505 kb on + strand, within Dshi_2737at 2899.588 kb on - strand, within Dshi_2737at 2899.686 kb on - strandat 2899.790 kb on - strandat 2899.808 kb on + strandat 2899.815 kb on - strandat 2899.937 kb on - strand, within Dshi_2738at 2900.636 kb on + strandat 2900.636 kb on + strandat 2900.637 kb on + strandat 2900.678 kb on - strandat 2900.681 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
remove
2,897,372 + Dshi_2736 0.21 -2.9
2,897,399 + Dshi_2736 0.23 -2.6
2,897,520 + Dshi_2736 0.34 -2.4
2,897,525 + Dshi_2736 0.34 -0.6
2,897,587 + Dshi_2736 0.39 +3.2
2,897,662 - Dshi_2736 0.46 -0.8
2,897,688 - Dshi_2736 0.48 +1.8
2,897,700 + Dshi_2736 0.49 -2.2
2,897,807 - Dshi_2736 0.59 -0.8
2,897,885 - Dshi_2736 0.65 +0.7
2,897,916 - Dshi_2736 0.68 +0.1
2,898,006 + Dshi_2736 0.76 -0.9
2,898,104 + Dshi_2736 0.84 -2.4
2,898,226 - -2.2
2,898,327 - -0.1
2,898,327 - -2.1
2,898,410 + +0.8
2,898,410 + +0.0
2,898,418 - -1.4
2,898,418 - -0.5
2,898,418 - -0.6
2,898,516 - Dshi_2737 0.12 +1.8
2,898,598 - Dshi_2737 0.17 -0.2
2,898,636 + Dshi_2737 0.20 -0.0
2,898,674 - Dshi_2737 0.22 -2.2
2,898,862 - Dshi_2737 0.35 -0.4
2,898,872 + Dshi_2737 0.36 +3.2
2,898,880 - Dshi_2737 0.37 -0.0
2,898,915 + Dshi_2737 0.39 +2.4
2,899,068 - Dshi_2737 0.50 +0.2
2,899,073 - Dshi_2737 0.50 -0.9
2,899,194 - Dshi_2737 0.58 -0.8
2,899,238 - Dshi_2737 0.61 +0.1
2,899,290 + Dshi_2737 0.65 -0.7
2,899,293 - Dshi_2737 0.65 -0.1
2,899,307 - Dshi_2737 0.66 -1.1
2,899,326 + Dshi_2737 0.67 -0.1
2,899,362 - Dshi_2737 0.70 +0.1
2,899,373 + Dshi_2737 0.71 -1.9
2,899,409 + +0.4
2,899,490 + Dshi_2737 0.79 -1.0
2,899,498 - Dshi_2737 0.79 -0.7
2,899,498 - Dshi_2737 0.79 +0.6
2,899,505 + Dshi_2737 0.80 +1.1
2,899,505 + Dshi_2737 0.80 +0.5
2,899,588 - Dshi_2737 0.85 +0.1
2,899,686 - +1.2
2,899,790 - +0.2
2,899,808 + +0.2
2,899,815 - -0.5
2,899,937 - Dshi_2738 0.12 +0.1
2,900,636 + +0.6
2,900,636 + -1.6
2,900,637 + -0.3
2,900,678 - +0.2
2,900,681 + +0.0

Or see this region's nucleotide sequence