Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2542 and Dshi_2543 are separated by 30 nucleotides Dshi_2543 and Dshi_2544 overlap by 1 nucleotides Dshi_2544 and Dshi_2545 overlap by 4 nucleotides
Dshi_2542: Dshi_2542 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (RefSeq), at 2,698,518 to 2,699,444
_2542
Dshi_2543: Dshi_2543 - NMT1/THI5 like domain protein (RefSeq), at 2,699,475 to 2,700,533
_2543
Dshi_2544: Dshi_2544 - ABC transporter related (RefSeq), at 2,700,533 to 2,701,342
_2544
Dshi_2545: Dshi_2545 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,701,339 to 2,702,202
_2545
Position (kb)
2699
2700
2701 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2698.508 kb on + strand at 2698.516 kb on + strand at 2698.558 kb on - strand at 2698.584 kb on + strand at 2698.584 kb on + strand at 2698.597 kb on - strand at 2698.643 kb on - strand, within Dshi_2542 at 2698.674 kb on + strand, within Dshi_2542 at 2698.774 kb on - strand, within Dshi_2542 at 2698.809 kb on + strand, within Dshi_2542 at 2698.809 kb on + strand, within Dshi_2542 at 2698.809 kb on + strand, within Dshi_2542 at 2698.809 kb on + strand, within Dshi_2542 at 2698.809 kb on + strand at 2698.817 kb on - strand, within Dshi_2542 at 2698.829 kb on - strand, within Dshi_2542 at 2698.855 kb on - strand, within Dshi_2542 at 2698.932 kb on + strand, within Dshi_2542 at 2698.980 kb on - strand, within Dshi_2542 at 2699.004 kb on - strand, within Dshi_2542 at 2699.014 kb on + strand, within Dshi_2542 at 2699.045 kb on + strand, within Dshi_2542 at 2699.088 kb on - strand, within Dshi_2542 at 2699.131 kb on + strand, within Dshi_2542 at 2699.131 kb on + strand, within Dshi_2542 at 2699.131 kb on + strand, within Dshi_2542 at 2699.131 kb on + strand, within Dshi_2542 at 2699.139 kb on - strand, within Dshi_2542 at 2699.139 kb on - strand, within Dshi_2542 at 2699.139 kb on - strand, within Dshi_2542 at 2699.290 kb on - strand, within Dshi_2542 at 2699.296 kb on + strand, within Dshi_2542 at 2699.369 kb on + strand at 2699.369 kb on + strand at 2699.418 kb on + strand at 2699.418 kb on + strand at 2699.447 kb on - strand at 2699.502 kb on + strand at 2699.510 kb on - strand at 2699.618 kb on + strand, within Dshi_2543 at 2699.618 kb on + strand, within Dshi_2543 at 2699.618 kb on + strand, within Dshi_2543 at 2699.626 kb on - strand, within Dshi_2543 at 2699.626 kb on - strand, within Dshi_2543 at 2699.633 kb on + strand, within Dshi_2543 at 2699.659 kb on + strand, within Dshi_2543 at 2699.688 kb on + strand, within Dshi_2543 at 2699.820 kb on + strand, within Dshi_2543 at 2699.874 kb on + strand, within Dshi_2543 at 2699.974 kb on + strand, within Dshi_2543 at 2700.142 kb on + strand, within Dshi_2543 at 2700.209 kb on + strand, within Dshi_2543 at 2700.216 kb on + strand, within Dshi_2543 at 2700.216 kb on + strand, within Dshi_2543 at 2700.240 kb on + strand, within Dshi_2543 at 2700.248 kb on - strand, within Dshi_2543 at 2700.321 kb on - strand, within Dshi_2543 at 2700.328 kb on - strand, within Dshi_2543 at 2700.344 kb on + strand, within Dshi_2543 at 2700.344 kb on + strand, within Dshi_2543 at 2700.362 kb on - strand, within Dshi_2543 at 2700.398 kb on - strand, within Dshi_2543 at 2700.398 kb on - strand, within Dshi_2543 at 2700.409 kb on - strand, within Dshi_2543 at 2700.413 kb on + strand, within Dshi_2543 at 2700.448 kb on - strand at 2700.463 kb on + strand at 2700.473 kb on - strand at 2700.605 kb on + strand at 2700.651 kb on + strand, within Dshi_2544 at 2700.661 kb on + strand, within Dshi_2544 at 2700.661 kb on + strand, within Dshi_2544 at 2700.679 kb on - strand, within Dshi_2544 at 2700.680 kb on - strand, within Dshi_2544 at 2700.743 kb on - strand, within Dshi_2544 at 2700.743 kb on - strand, within Dshi_2544 at 2700.747 kb on + strand, within Dshi_2544 at 2700.748 kb on - strand, within Dshi_2544 at 2700.755 kb on - strand, within Dshi_2544 at 2700.852 kb on - strand, within Dshi_2544 at 2700.921 kb on + strand, within Dshi_2544 at 2700.929 kb on - strand, within Dshi_2544 at 2700.929 kb on - strand, within Dshi_2544 at 2700.964 kb on + strand, within Dshi_2544 at 2700.964 kb on + strand, within Dshi_2544 at 2700.972 kb on - strand, within Dshi_2544 at 2701.004 kb on + strand, within Dshi_2544 at 2701.022 kb on - strand, within Dshi_2544 at 2701.098 kb on - strand, within Dshi_2544 at 2701.124 kb on + strand, within Dshi_2544 at 2701.170 kb on + strand, within Dshi_2544 at 2701.174 kb on + strand, within Dshi_2544 at 2701.178 kb on - strand, within Dshi_2544 at 2701.206 kb on - strand, within Dshi_2544 at 2701.241 kb on + strand, within Dshi_2544 at 2701.241 kb on + strand, within Dshi_2544 at 2701.249 kb on - strand, within Dshi_2544 at 2701.328 kb on + strand at 2701.336 kb on + strand at 2701.361 kb on + strand at 2701.402 kb on + strand at 2701.433 kb on + strand, within Dshi_2545
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 2,698,508 + +0.5 2,698,516 + +0.3 2,698,558 - -0.5 2,698,584 + +0.1 2,698,584 + +0.1 2,698,597 - +3.9 2,698,643 - Dshi_2542 0.13 -1.0 2,698,674 + Dshi_2542 0.17 +1.3 2,698,774 - Dshi_2542 0.28 +0.5 2,698,809 + Dshi_2542 0.31 -1.0 2,698,809 + Dshi_2542 0.31 -0.1 2,698,809 + Dshi_2542 0.31 +0.3 2,698,809 + Dshi_2542 0.31 +0.3 2,698,809 + +1.3 2,698,817 - Dshi_2542 0.32 -1.0 2,698,829 - Dshi_2542 0.34 -1.0 2,698,855 - Dshi_2542 0.36 +1.0 2,698,932 + Dshi_2542 0.45 +2.6 2,698,980 - Dshi_2542 0.50 -1.2 2,699,004 - Dshi_2542 0.52 -0.0 2,699,014 + Dshi_2542 0.54 +0.5 2,699,045 + Dshi_2542 0.57 +0.1 2,699,088 - Dshi_2542 0.61 -0.3 2,699,131 + Dshi_2542 0.66 +1.1 2,699,131 + Dshi_2542 0.66 -0.6 2,699,131 + Dshi_2542 0.66 +0.7 2,699,131 + Dshi_2542 0.66 +3.1 2,699,139 - Dshi_2542 0.67 -0.7 2,699,139 - Dshi_2542 0.67 -2.3 2,699,139 - Dshi_2542 0.67 +0.4 2,699,290 - Dshi_2542 0.83 +1.4 2,699,296 + Dshi_2542 0.84 +1.3 2,699,369 + -1.9 2,699,369 + -1.3 2,699,418 + -0.1 2,699,418 + -0.8 2,699,447 - +0.0 2,699,502 + +2.3 2,699,510 - -0.2 2,699,618 + Dshi_2543 0.14 -1.4 2,699,618 + Dshi_2543 0.14 +1.5 2,699,618 + Dshi_2543 0.14 +0.3 2,699,626 - Dshi_2543 0.14 +0.8 2,699,626 - Dshi_2543 0.14 -1.7 2,699,633 + Dshi_2543 0.15 +0.8 2,699,659 + Dshi_2543 0.17 +0.2 2,699,688 + Dshi_2543 0.20 -0.1 2,699,820 + Dshi_2543 0.33 -0.3 2,699,874 + Dshi_2543 0.38 +0.3 2,699,974 + Dshi_2543 0.47 -0.5 2,700,142 + Dshi_2543 0.63 +1.9 2,700,209 + Dshi_2543 0.69 -1.3 2,700,216 + Dshi_2543 0.70 +0.1 2,700,216 + Dshi_2543 0.70 +1.5 2,700,240 + Dshi_2543 0.72 +1.1 2,700,248 - Dshi_2543 0.73 -0.1 2,700,321 - Dshi_2543 0.80 +2.3 2,700,328 - Dshi_2543 0.81 +0.9 2,700,344 + Dshi_2543 0.82 +0.3 2,700,344 + Dshi_2543 0.82 -0.5 2,700,362 - Dshi_2543 0.84 +2.3 2,700,398 - Dshi_2543 0.87 +4.1 2,700,398 - Dshi_2543 0.87 -1.9 2,700,409 - Dshi_2543 0.88 -0.8 2,700,413 + Dshi_2543 0.89 -0.3 2,700,448 - +1.0 2,700,463 + +0.5 2,700,473 - +1.2 2,700,605 + -0.3 2,700,651 + Dshi_2544 0.15 +0.6 2,700,661 + Dshi_2544 0.16 +0.9 2,700,661 + Dshi_2544 0.16 -0.5 2,700,679 - Dshi_2544 0.18 +2.7 2,700,680 - Dshi_2544 0.18 -0.3 2,700,743 - Dshi_2544 0.26 +0.2 2,700,743 - Dshi_2544 0.26 +1.5 2,700,747 + Dshi_2544 0.26 +0.6 2,700,748 - Dshi_2544 0.27 -0.1 2,700,755 - Dshi_2544 0.27 -2.3 2,700,852 - Dshi_2544 0.39 +0.9 2,700,921 + Dshi_2544 0.48 -0.2 2,700,929 - Dshi_2544 0.49 +0.9 2,700,929 - Dshi_2544 0.49 -0.6 2,700,964 + Dshi_2544 0.53 +0.2 2,700,964 + Dshi_2544 0.53 +0.6 2,700,972 - Dshi_2544 0.54 +0.9 2,701,004 + Dshi_2544 0.58 -1.0 2,701,022 - Dshi_2544 0.60 +0.2 2,701,098 - Dshi_2544 0.70 -0.3 2,701,124 + Dshi_2544 0.73 -0.1 2,701,170 + Dshi_2544 0.79 +0.0 2,701,174 + Dshi_2544 0.79 +0.8 2,701,178 - Dshi_2544 0.80 +0.1 2,701,206 - Dshi_2544 0.83 +0.6 2,701,241 + Dshi_2544 0.87 +0.9 2,701,241 + Dshi_2544 0.87 -0.0 2,701,249 - Dshi_2544 0.88 -0.7 2,701,328 + -0.3 2,701,336 + +0.6 2,701,361 + +0.8 2,701,402 + -1.3 2,701,433 + Dshi_2545 0.11 +0.9
Or see this region's nucleotide sequence