Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2489

Experiment: m.b. Chlorite 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2488 and Dshi_2489 are separated by 137 nucleotidesDshi_2489 and Dshi_2490 are separated by 54 nucleotides Dshi_2488: Dshi_2488 - transcriptional regulator, XRE family (RefSeq), at 2,643,636 to 2,645,039 _2488 Dshi_2489: Dshi_2489 - Serine--glyoxylate transaminase (RefSeq), at 2,645,177 to 2,646,379 _2489 Dshi_2490: Dshi_2490 - Citryl-CoA lyase (RefSeq), at 2,646,434 to 2,647,366 _2490 Position (kb) 2645 2646 2647Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2644.363 kb on - strand, within Dshi_2488at 2644.402 kb on - strand, within Dshi_2488at 2644.431 kb on + strand, within Dshi_2488at 2644.491 kb on - strand, within Dshi_2488at 2644.540 kb on + strand, within Dshi_2488at 2644.548 kb on - strand, within Dshi_2488at 2644.616 kb on + strand, within Dshi_2488at 2644.665 kb on - strand, within Dshi_2488at 2644.712 kb on + strand, within Dshi_2488at 2644.884 kb on - strand, within Dshi_2488at 2644.953 kb on - strandat 2644.964 kb on - strandat 2644.978 kb on + strandat 2645.010 kb on + strandat 2645.100 kb on - strandat 2645.146 kb on - strandat 2645.186 kb on + strandat 2645.186 kb on + strandat 2645.214 kb on + strandat 2645.222 kb on - strandat 2645.303 kb on - strand, within Dshi_2489at 2645.303 kb on - strand, within Dshi_2489at 2645.411 kb on - strand, within Dshi_2489at 2645.573 kb on - strand, within Dshi_2489at 2645.595 kb on + strand, within Dshi_2489at 2645.621 kb on + strand, within Dshi_2489at 2645.623 kb on - strand, within Dshi_2489at 2645.629 kb on - strand, within Dshi_2489at 2645.698 kb on - strand, within Dshi_2489at 2645.794 kb on - strand, within Dshi_2489at 2645.796 kb on + strand, within Dshi_2489at 2645.910 kb on - strand, within Dshi_2489at 2645.921 kb on + strand, within Dshi_2489at 2645.942 kb on - strand, within Dshi_2489at 2645.953 kb on - strand, within Dshi_2489at 2645.990 kb on + strand, within Dshi_2489at 2646.004 kb on + strand, within Dshi_2489at 2646.091 kb on - strand, within Dshi_2489at 2646.125 kb on + strand, within Dshi_2489at 2646.125 kb on + strand, within Dshi_2489at 2646.133 kb on - strand, within Dshi_2489at 2646.171 kb on + strand, within Dshi_2489at 2646.171 kb on + strand, within Dshi_2489at 2646.171 kb on + strand, within Dshi_2489at 2646.171 kb on + strand, within Dshi_2489at 2646.179 kb on - strand, within Dshi_2489at 2646.179 kb on - strand, within Dshi_2489at 2646.179 kb on - strand, within Dshi_2489at 2646.179 kb on - strand, within Dshi_2489at 2646.330 kb on - strandat 2646.383 kb on + strandat 2646.449 kb on + strandat 2646.545 kb on - strand, within Dshi_2490at 2646.557 kb on - strand, within Dshi_2490at 2646.568 kb on - strand, within Dshi_2490at 2646.625 kb on + strand, within Dshi_2490at 2646.633 kb on - strand, within Dshi_2490at 2646.633 kb on - strand, within Dshi_2490at 2646.633 kb on - strand, within Dshi_2490at 2646.683 kb on - strand, within Dshi_2490at 2646.713 kb on + strand, within Dshi_2490at 2646.747 kb on - strand, within Dshi_2490at 2646.757 kb on + strand, within Dshi_2490at 2646.765 kb on - strand, within Dshi_2490at 2646.765 kb on - strand, within Dshi_2490at 2646.791 kb on + strand, within Dshi_2490at 2646.795 kb on - strand, within Dshi_2490at 2646.799 kb on - strand, within Dshi_2490at 2646.799 kb on - strand, within Dshi_2490at 2646.830 kb on - strand, within Dshi_2490at 2646.835 kb on + strand, within Dshi_2490at 2646.888 kb on - strand, within Dshi_2490at 2646.888 kb on - strand, within Dshi_2490at 2646.892 kb on + strand, within Dshi_2490at 2646.929 kb on + strand, within Dshi_2490at 2646.937 kb on - strand, within Dshi_2490at 2646.963 kb on + strand, within Dshi_2490at 2646.981 kb on - strand, within Dshi_2490at 2646.994 kb on - strand, within Dshi_2490at 2646.997 kb on + strand, within Dshi_2490at 2647.156 kb on + strand, within Dshi_2490at 2647.221 kb on + strand, within Dshi_2490at 2647.231 kb on + strand, within Dshi_2490at 2647.366 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
remove
2,644,363 - Dshi_2488 0.52 +4.0
2,644,402 - Dshi_2488 0.55 -0.4
2,644,431 + Dshi_2488 0.57 -1.7
2,644,491 - Dshi_2488 0.61 +0.7
2,644,540 + Dshi_2488 0.64 +0.3
2,644,548 - Dshi_2488 0.65 +0.7
2,644,616 + Dshi_2488 0.70 -0.2
2,644,665 - Dshi_2488 0.73 +0.3
2,644,712 + Dshi_2488 0.77 +1.3
2,644,884 - Dshi_2488 0.89 +1.6
2,644,953 - -0.5
2,644,964 - -0.7
2,644,978 + -1.3
2,645,010 + -1.2
2,645,100 - +0.4
2,645,146 - +2.6
2,645,186 + -0.8
2,645,186 + -0.8
2,645,214 + +0.3
2,645,222 - -0.0
2,645,303 - Dshi_2489 0.10 -0.6
2,645,303 - Dshi_2489 0.10 +1.3
2,645,411 - Dshi_2489 0.19 -0.2
2,645,573 - Dshi_2489 0.33 -0.1
2,645,595 + Dshi_2489 0.35 +2.3
2,645,621 + Dshi_2489 0.37 +3.8
2,645,623 - Dshi_2489 0.37 +2.4
2,645,629 - Dshi_2489 0.38 -1.4
2,645,698 - Dshi_2489 0.43 -3.2
2,645,794 - Dshi_2489 0.51 -1.3
2,645,796 + Dshi_2489 0.51 -0.5
2,645,910 - Dshi_2489 0.61 -1.6
2,645,921 + Dshi_2489 0.62 +0.3
2,645,942 - Dshi_2489 0.64 -0.6
2,645,953 - Dshi_2489 0.65 +1.0
2,645,990 + Dshi_2489 0.68 -0.4
2,646,004 + Dshi_2489 0.69 -1.6
2,646,091 - Dshi_2489 0.76 -0.1
2,646,125 + Dshi_2489 0.79 -1.3
2,646,125 + Dshi_2489 0.79 -1.9
2,646,133 - Dshi_2489 0.79 +3.4
2,646,171 + Dshi_2489 0.83 -0.7
2,646,171 + Dshi_2489 0.83 -0.2
2,646,171 + Dshi_2489 0.83 +0.7
2,646,171 + Dshi_2489 0.83 +1.1
2,646,179 - Dshi_2489 0.83 +3.1
2,646,179 - Dshi_2489 0.83 +0.9
2,646,179 - Dshi_2489 0.83 -0.1
2,646,179 - Dshi_2489 0.83 +1.8
2,646,330 - +0.3
2,646,383 + -0.2
2,646,449 + -0.5
2,646,545 - Dshi_2490 0.12 -0.7
2,646,557 - Dshi_2490 0.13 -1.0
2,646,568 - Dshi_2490 0.14 +0.3
2,646,625 + Dshi_2490 0.20 -0.5
2,646,633 - Dshi_2490 0.21 -0.4
2,646,633 - Dshi_2490 0.21 -0.0
2,646,633 - Dshi_2490 0.21 -0.4
2,646,683 - Dshi_2490 0.27 -0.7
2,646,713 + Dshi_2490 0.30 -0.6
2,646,747 - Dshi_2490 0.34 +1.2
2,646,757 + Dshi_2490 0.35 +1.6
2,646,765 - Dshi_2490 0.35 -1.6
2,646,765 - Dshi_2490 0.35 -0.5
2,646,791 + Dshi_2490 0.38 +0.8
2,646,795 - Dshi_2490 0.39 +0.5
2,646,799 - Dshi_2490 0.39 -0.6
2,646,799 - Dshi_2490 0.39 -1.5
2,646,830 - Dshi_2490 0.42 -2.5
2,646,835 + Dshi_2490 0.43 -1.6
2,646,888 - Dshi_2490 0.49 +3.5
2,646,888 - Dshi_2490 0.49 +0.3
2,646,892 + Dshi_2490 0.49 +0.1
2,646,929 + Dshi_2490 0.53 +0.0
2,646,937 - Dshi_2490 0.54 -0.4
2,646,963 + Dshi_2490 0.57 +0.4
2,646,981 - Dshi_2490 0.59 +1.3
2,646,994 - Dshi_2490 0.60 +0.4
2,646,997 + Dshi_2490 0.60 +0.3
2,647,156 + Dshi_2490 0.77 -1.8
2,647,221 + Dshi_2490 0.84 +0.3
2,647,231 + Dshi_2490 0.85 -3.1
2,647,366 + -3.3

Or see this region's nucleotide sequence