Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2469

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2468 and Dshi_2469 are separated by 9 nucleotidesDshi_2469 and Dshi_2470 are separated by 12 nucleotides Dshi_2468: Dshi_2468 - hypothetical protein (RefSeq), at 2,619,421 to 2,620,425 _2468 Dshi_2469: Dshi_2469 - phospho-N-acetylmuramoyl-pentapeptide-transferase (RefSeq), at 2,620,435 to 2,621,520 _2469 Dshi_2470: Dshi_2470 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (RefSeq), at 2,621,533 to 2,622,972 _2470 Position (kb) 2620 2621 2622Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2619.447 kb on - strandat 2619.487 kb on + strandat 2619.487 kb on + strandat 2619.490 kb on - strandat 2619.502 kb on + strandat 2619.502 kb on + strandat 2619.512 kb on + strandat 2619.512 kb on + strandat 2619.512 kb on + strandat 2619.512 kb on + strandat 2619.512 kb on + strandat 2619.512 kb on + strandat 2619.512 kb on + strandat 2619.512 kb on + strandat 2619.512 kb on + strandat 2619.512 kb on + strandat 2619.512 kb on + strandat 2619.512 kb on + strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.520 kb on - strandat 2619.534 kb on - strand, within Dshi_2468at 2619.537 kb on - strand, within Dshi_2468at 2619.552 kb on + strand, within Dshi_2468at 2619.555 kb on - strand, within Dshi_2468at 2619.562 kb on + strand, within Dshi_2468at 2619.572 kb on - strand, within Dshi_2468at 2619.621 kb on - strand, within Dshi_2468at 2619.631 kb on + strand, within Dshi_2468at 2619.634 kb on + strand, within Dshi_2468at 2619.650 kb on + strand, within Dshi_2468at 2619.724 kb on + strand, within Dshi_2468at 2619.757 kb on - strand, within Dshi_2468at 2619.796 kb on - strand, within Dshi_2468at 2619.846 kb on - strand, within Dshi_2468at 2619.846 kb on - strand, within Dshi_2468at 2619.897 kb on - strand, within Dshi_2468at 2619.908 kb on + strand, within Dshi_2468at 2619.993 kb on - strand, within Dshi_2468at 2620.047 kb on + strand, within Dshi_2468at 2620.055 kb on - strand, within Dshi_2468at 2620.131 kb on + strand, within Dshi_2468at 2620.171 kb on - strand, within Dshi_2468at 2620.173 kb on + strand, within Dshi_2468at 2620.181 kb on - strand, within Dshi_2468at 2620.292 kb on - strand, within Dshi_2468at 2620.301 kb on - strand, within Dshi_2468at 2620.338 kb on + strandat 2620.343 kb on + strandat 2620.351 kb on - strandat 2620.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,619,447 - -0.9
2,619,487 + +0.2
2,619,487 + -1.8
2,619,490 - -2.9
2,619,502 + +0.7
2,619,502 + +0.2
2,619,512 + +2.6
2,619,512 + -1.6
2,619,512 + +0.2
2,619,512 + -0.2
2,619,512 + -1.0
2,619,512 + +1.6
2,619,512 + -1.8
2,619,512 + +0.0
2,619,512 + +0.2
2,619,512 + -1.0
2,619,512 + +0.2
2,619,512 + +2.2
2,619,520 - -1.5
2,619,520 - +0.2
2,619,520 - +0.1
2,619,520 - -0.8
2,619,520 - -0.3
2,619,520 - -0.8
2,619,520 - +0.8
2,619,520 - -0.3
2,619,520 - +0.8
2,619,520 - -2.6
2,619,520 - +0.2
2,619,520 - -0.6
2,619,520 - -0.4
2,619,520 - -3.8
2,619,534 - Dshi_2468 0.11 -1.3
2,619,537 - Dshi_2468 0.12 -1.1
2,619,552 + Dshi_2468 0.13 -1.5
2,619,555 - Dshi_2468 0.13 -0.9
2,619,562 + Dshi_2468 0.14 +1.8
2,619,572 - Dshi_2468 0.15 -2.6
2,619,621 - Dshi_2468 0.20 +0.2
2,619,631 + Dshi_2468 0.21 -0.5
2,619,634 + Dshi_2468 0.21 +1.8
2,619,650 + Dshi_2468 0.23 +0.2
2,619,724 + Dshi_2468 0.30 -3.1
2,619,757 - Dshi_2468 0.33 +0.3
2,619,796 - Dshi_2468 0.37 -1.1
2,619,846 - Dshi_2468 0.42 -0.2
2,619,846 - Dshi_2468 0.42 -0.8
2,619,897 - Dshi_2468 0.47 +1.2
2,619,908 + Dshi_2468 0.48 +0.2
2,619,993 - Dshi_2468 0.57 -1.0
2,620,047 + Dshi_2468 0.62 -1.1
2,620,055 - Dshi_2468 0.63 +0.2
2,620,131 + Dshi_2468 0.71 +1.2
2,620,171 - Dshi_2468 0.75 +0.2
2,620,173 + Dshi_2468 0.75 -0.8
2,620,181 - Dshi_2468 0.76 +0.2
2,620,292 - Dshi_2468 0.87 +1.2
2,620,301 - Dshi_2468 0.88 +1.2
2,620,338 + +3.4
2,620,343 + -1.2
2,620,351 - -1.0
2,620,418 - -0.1

Or see this region's nucleotide sequence