Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2261

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2259 and Dshi_2260 are separated by 210 nucleotidesDshi_2260 and Dshi_2261 are separated by 51 nucleotidesDshi_2261 and Dshi_2262 are separated by 121 nucleotides Dshi_2259: Dshi_2259 - hypothetical protein (RefSeq), at 2,380,410 to 2,380,916 _2259 Dshi_2260: Dshi_2260 - hypothetical protein (RefSeq), at 2,381,127 to 2,381,549 _2260 Dshi_2261: Dshi_2261 - RNA polymerase, sigma 70 subunit, RpoD family (RefSeq), at 2,381,601 to 2,383,595 _2261 Dshi_2262: Dshi_2262 - DNA primase (RefSeq), at 2,383,717 to 2,385,669 _2262 Position (kb) 2381 2382 2383 2384Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2380.739 kb on - strand, within Dshi_2259at 2380.742 kb on + strand, within Dshi_2259at 2380.793 kb on - strand, within Dshi_2259at 2380.798 kb on - strand, within Dshi_2259at 2380.799 kb on + strand, within Dshi_2259at 2380.964 kb on - strandat 2380.990 kb on + strandat 2380.998 kb on - strandat 2381.014 kb on + strandat 2381.017 kb on + strandat 2381.025 kb on - strandat 2381.025 kb on - strandat 2381.032 kb on - strandat 2381.033 kb on - strandat 2381.048 kb on + strandat 2381.093 kb on + strandat 2381.145 kb on + strandat 2381.317 kb on + strand, within Dshi_2260at 2381.381 kb on + strand, within Dshi_2260at 2381.389 kb on - strandat 2381.399 kb on - strand, within Dshi_2260at 2381.399 kb on - strand, within Dshi_2260at 2381.576 kb on + strandat 2381.596 kb on + strandat 2383.689 kb on - strandat 2383.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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2,380,739 - Dshi_2259 0.65 -3.3
2,380,742 + Dshi_2259 0.65 -2.3
2,380,793 - Dshi_2259 0.76 -1.1
2,380,798 - Dshi_2259 0.77 -3.8
2,380,799 + Dshi_2259 0.77 -0.9
2,380,964 - -0.3
2,380,990 + +1.2
2,380,998 - -2.1
2,381,014 + -0.6
2,381,017 + -0.8
2,381,025 - +0.4
2,381,025 - -1.7
2,381,032 - +0.6
2,381,033 - +0.7
2,381,048 + -0.9
2,381,093 + -0.2
2,381,145 + -2.5
2,381,317 + Dshi_2260 0.45 +0.4
2,381,381 + Dshi_2260 0.60 +1.2
2,381,389 - +0.2
2,381,399 - Dshi_2260 0.64 +2.8
2,381,399 - Dshi_2260 0.64 +1.8
2,381,576 + -0.1
2,381,596 + +0.5
2,383,689 - +0.0
2,383,724 - +1.8

Or see this region's nucleotide sequence