Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2258 and Dshi_2259 are separated by 49 nucleotides Dshi_2259 and Dshi_2260 are separated by 210 nucleotides Dshi_2260 and Dshi_2261 are separated by 51 nucleotides
Dshi_2258: Dshi_2258 - protein of unknown function UPF0047 (RefSeq), at 2,379,941 to 2,380,360
_2258
Dshi_2259: Dshi_2259 - hypothetical protein (RefSeq), at 2,380,410 to 2,380,916
_2259
Dshi_2260: Dshi_2260 - hypothetical protein (RefSeq), at 2,381,127 to 2,381,549
_2260
Dshi_2261: Dshi_2261 - RNA polymerase, sigma 70 subunit, RpoD family (RefSeq), at 2,381,601 to 2,383,595
_2261
Position (kb)
2381
2382 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2380.233 kb on - strand, within Dshi_2258 at 2380.235 kb on + strand, within Dshi_2258 at 2380.415 kb on - strand at 2380.493 kb on + strand, within Dshi_2259 at 2380.508 kb on - strand, within Dshi_2259 at 2380.546 kb on + strand, within Dshi_2259 at 2380.739 kb on - strand, within Dshi_2259 at 2380.742 kb on + strand, within Dshi_2259 at 2380.793 kb on - strand, within Dshi_2259 at 2380.798 kb on - strand, within Dshi_2259 at 2380.799 kb on + strand, within Dshi_2259 at 2380.964 kb on - strand at 2380.990 kb on + strand at 2380.998 kb on - strand at 2381.014 kb on + strand at 2381.017 kb on + strand at 2381.025 kb on - strand at 2381.025 kb on - strand at 2381.032 kb on - strand at 2381.033 kb on - strand at 2381.048 kb on + strand at 2381.093 kb on + strand at 2381.145 kb on + strand at 2381.317 kb on + strand, within Dshi_2260 at 2381.381 kb on + strand, within Dshi_2260 at 2381.389 kb on - strand at 2381.399 kb on - strand, within Dshi_2260 at 2381.399 kb on - strand, within Dshi_2260 at 2381.576 kb on + strand at 2381.596 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 2,380,233 - Dshi_2258 0.70 -0.8 2,380,235 + Dshi_2258 0.70 +0.2 2,380,415 - +0.7 2,380,493 + Dshi_2259 0.16 +0.2 2,380,508 - Dshi_2259 0.19 -0.7 2,380,546 + Dshi_2259 0.27 +0.8 2,380,739 - Dshi_2259 0.65 -3.3 2,380,742 + Dshi_2259 0.65 -2.3 2,380,793 - Dshi_2259 0.76 -1.1 2,380,798 - Dshi_2259 0.77 -3.8 2,380,799 + Dshi_2259 0.77 -0.9 2,380,964 - -0.3 2,380,990 + +1.2 2,380,998 - -2.1 2,381,014 + -0.6 2,381,017 + -0.8 2,381,025 - +0.4 2,381,025 - -1.7 2,381,032 - +0.6 2,381,033 - +0.7 2,381,048 + -0.9 2,381,093 + -0.2 2,381,145 + -2.5 2,381,317 + Dshi_2260 0.45 +0.4 2,381,381 + Dshi_2260 0.60 +1.2 2,381,389 - +0.2 2,381,399 - Dshi_2260 0.64 +2.8 2,381,399 - Dshi_2260 0.64 +1.8 2,381,576 + -0.1 2,381,596 + +0.5
Or see this region's nucleotide sequence