Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2237 and Dshi_2238 overlap by 14 nucleotides Dshi_2238 and Dshi_2239 are separated by 2 nucleotides Dshi_2239 and Dshi_2240 are separated by 69 nucleotides
Dshi_2237: Dshi_2237 - protein of unknown function DUF1486 (RefSeq), at 2,361,020 to 2,362,003
_2237
Dshi_2238: Dshi_2238 - transcriptional regulator, LacI family (RefSeq), at 2,361,990 to 2,363,024
_2238
Dshi_2239: Dshi_2239 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,363,027 to 2,363,779
_2239
Dshi_2240: Dshi_2240 - hypothetical protein (RefSeq), at 2,363,849 to 2,364,484
_2240
Position (kb)
2361
2362
2363
2364 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2361.068 kb on + strand at 2361.217 kb on - strand, within Dshi_2237 at 2361.217 kb on - strand, within Dshi_2237 at 2361.382 kb on - strand, within Dshi_2237 at 2361.408 kb on + strand, within Dshi_2237 at 2361.427 kb on + strand, within Dshi_2237 at 2361.427 kb on + strand, within Dshi_2237 at 2361.435 kb on - strand, within Dshi_2237 at 2361.477 kb on + strand, within Dshi_2237 at 2361.478 kb on + strand, within Dshi_2237 at 2361.479 kb on - strand, within Dshi_2237 at 2361.485 kb on - strand, within Dshi_2237 at 2361.486 kb on - strand, within Dshi_2237 at 2361.498 kb on + strand, within Dshi_2237 at 2361.500 kb on + strand, within Dshi_2237 at 2361.667 kb on - strand, within Dshi_2237 at 2361.677 kb on - strand, within Dshi_2237 at 2361.776 kb on + strand, within Dshi_2237 at 2361.784 kb on - strand, within Dshi_2237 at 2361.814 kb on + strand, within Dshi_2237 at 2361.828 kb on - strand, within Dshi_2237 at 2361.931 kb on - strand at 2361.941 kb on - strand at 2362.083 kb on - strand at 2362.145 kb on - strand, within Dshi_2238 at 2362.201 kb on - strand, within Dshi_2238 at 2362.212 kb on + strand, within Dshi_2238 at 2362.219 kb on + strand, within Dshi_2238 at 2362.220 kb on - strand, within Dshi_2238 at 2362.263 kb on - strand, within Dshi_2238 at 2362.318 kb on + strand, within Dshi_2238 at 2362.486 kb on + strand, within Dshi_2238 at 2362.506 kb on - strand, within Dshi_2238 at 2362.533 kb on - strand, within Dshi_2238 at 2362.668 kb on - strand, within Dshi_2238 at 2362.760 kb on - strand, within Dshi_2238 at 2362.797 kb on - strand, within Dshi_2238 at 2362.851 kb on - strand, within Dshi_2238 at 2362.889 kb on - strand, within Dshi_2238 at 2363.054 kb on - strand at 2363.112 kb on + strand, within Dshi_2239 at 2363.144 kb on - strand, within Dshi_2239 at 2363.146 kb on + strand, within Dshi_2239 at 2363.209 kb on - strand, within Dshi_2239 at 2363.235 kb on + strand, within Dshi_2239 at 2363.243 kb on - strand, within Dshi_2239 at 2363.302 kb on + strand, within Dshi_2239 at 2363.310 kb on + strand, within Dshi_2239 at 2363.335 kb on - strand, within Dshi_2239 at 2363.353 kb on - strand, within Dshi_2239 at 2363.355 kb on + strand, within Dshi_2239 at 2363.390 kb on + strand, within Dshi_2239 at 2363.414 kb on + strand, within Dshi_2239 at 2363.422 kb on - strand, within Dshi_2239 at 2363.439 kb on + strand, within Dshi_2239 at 2363.644 kb on + strand, within Dshi_2239 at 2363.652 kb on - strand, within Dshi_2239 at 2363.652 kb on - strand, within Dshi_2239 at 2363.663 kb on - strand, within Dshi_2239 at 2363.699 kb on + strand, within Dshi_2239 at 2363.704 kb on + strand at 2363.724 kb on + strand at 2363.774 kb on - strand at 2363.807 kb on - strand at 2363.816 kb on + strand at 2363.816 kb on + strand at 2363.824 kb on - strand at 2363.865 kb on - strand at 2363.889 kb on + strand at 2363.921 kb on - strand, within Dshi_2240 at 2363.991 kb on - strand, within Dshi_2240 at 2364.001 kb on - strand, within Dshi_2240 at 2364.006 kb on - strand, within Dshi_2240 at 2364.012 kb on + strand, within Dshi_2240 at 2364.024 kb on + strand, within Dshi_2240
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 2,361,068 + +3.2 2,361,217 - Dshi_2237 0.20 -1.7 2,361,217 - Dshi_2237 0.20 +2.0 2,361,382 - Dshi_2237 0.37 -0.1 2,361,408 + Dshi_2237 0.39 +0.3 2,361,427 + Dshi_2237 0.41 +0.3 2,361,427 + Dshi_2237 0.41 -0.4 2,361,435 - Dshi_2237 0.42 -0.1 2,361,477 + Dshi_2237 0.46 +1.8 2,361,478 + Dshi_2237 0.47 -1.3 2,361,479 - Dshi_2237 0.47 -0.3 2,361,485 - Dshi_2237 0.47 -0.2 2,361,486 - Dshi_2237 0.47 +0.2 2,361,498 + Dshi_2237 0.49 -1.0 2,361,500 + Dshi_2237 0.49 -0.5 2,361,667 - Dshi_2237 0.66 -3.3 2,361,677 - Dshi_2237 0.67 +1.3 2,361,776 + Dshi_2237 0.77 -0.4 2,361,784 - Dshi_2237 0.78 -0.1 2,361,814 + Dshi_2237 0.81 -0.2 2,361,828 - Dshi_2237 0.82 +0.0 2,361,931 - +0.8 2,361,941 - +1.2 2,362,083 - -0.6 2,362,145 - Dshi_2238 0.15 +4.6 2,362,201 - Dshi_2238 0.20 +2.3 2,362,212 + Dshi_2238 0.21 -1.0 2,362,219 + Dshi_2238 0.22 +0.1 2,362,220 - Dshi_2238 0.22 +0.3 2,362,263 - Dshi_2238 0.26 +1.9 2,362,318 + Dshi_2238 0.32 +0.4 2,362,486 + Dshi_2238 0.48 +0.3 2,362,506 - Dshi_2238 0.50 +1.2 2,362,533 - Dshi_2238 0.52 +0.3 2,362,668 - Dshi_2238 0.66 -0.2 2,362,760 - Dshi_2238 0.74 -0.6 2,362,797 - Dshi_2238 0.78 +0.2 2,362,851 - Dshi_2238 0.83 +0.9 2,362,889 - Dshi_2238 0.87 +0.4 2,363,054 - +0.3 2,363,112 + Dshi_2239 0.11 +0.9 2,363,144 - Dshi_2239 0.16 -0.3 2,363,146 + Dshi_2239 0.16 +0.8 2,363,209 - Dshi_2239 0.24 -1.1 2,363,235 + Dshi_2239 0.28 -0.2 2,363,243 - Dshi_2239 0.29 -0.1 2,363,302 + Dshi_2239 0.37 -0.9 2,363,310 + Dshi_2239 0.38 +2.6 2,363,335 - Dshi_2239 0.41 +0.2 2,363,353 - Dshi_2239 0.43 +0.3 2,363,355 + Dshi_2239 0.44 -2.6 2,363,390 + Dshi_2239 0.48 +0.4 2,363,414 + Dshi_2239 0.51 +1.4 2,363,422 - Dshi_2239 0.52 -0.4 2,363,439 + Dshi_2239 0.55 -1.1 2,363,644 + Dshi_2239 0.82 -0.4 2,363,652 - Dshi_2239 0.83 -0.2 2,363,652 - Dshi_2239 0.83 +0.7 2,363,663 - Dshi_2239 0.84 +0.9 2,363,699 + Dshi_2239 0.89 +1.2 2,363,704 + -0.5 2,363,724 + -0.8 2,363,774 - +3.9 2,363,807 - -0.4 2,363,816 + -0.4 2,363,816 + +0.4 2,363,824 - -0.9 2,363,865 - -0.9 2,363,889 + -0.3 2,363,921 - Dshi_2240 0.11 -0.3 2,363,991 - Dshi_2240 0.22 -0.4 2,364,001 - Dshi_2240 0.24 +0.1 2,364,006 - Dshi_2240 0.25 +0.7 2,364,012 + Dshi_2240 0.26 -0.2 2,364,024 + Dshi_2240 0.28 +0.2
Or see this region's nucleotide sequence