Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1987

Experiment: m.b. Chlorite 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1986 and Dshi_1987 are separated by 356 nucleotidesDshi_1987 and Dshi_1988 are separated by 99 nucleotidesDshi_1988 and Dshi_1989 are separated by 3 nucleotides Dshi_1986: Dshi_1986 - isocitrate dehydrogenase, NADP-dependent (RefSeq), at 2,099,648 to 2,101,816 _1986 Dshi_1987: Dshi_1987 - hypothetical protein (RefSeq), at 2,102,173 to 2,102,721 _1987 Dshi_1988: Dshi_1988 - hypothetical protein (RefSeq), at 2,102,821 to 2,103,216 _1988 Dshi_1989: Dshi_1989 - secretion protein HlyD family protein (RefSeq), at 2,103,220 to 2,104,452 _1989 Position (kb) 2102 2103Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2101.909 kb on - strandat 2102.173 kb on - strandat 2102.258 kb on + strand, within Dshi_1987at 2102.258 kb on + strand, within Dshi_1987at 2102.266 kb on - strand, within Dshi_1987at 2102.278 kb on + strand, within Dshi_1987at 2102.286 kb on - strand, within Dshi_1987at 2102.286 kb on - strand, within Dshi_1987at 2102.466 kb on - strand, within Dshi_1987at 2102.652 kb on + strand, within Dshi_1987at 2102.868 kb on + strand, within Dshi_1988at 2102.947 kb on - strand, within Dshi_1988at 2102.968 kb on + strand, within Dshi_1988at 2103.008 kb on - strand, within Dshi_1988at 2103.200 kb on - strandat 2103.261 kb on - strandat 2103.296 kb on - strandat 2103.355 kb on - strand, within Dshi_1989at 2103.371 kb on + strand, within Dshi_1989at 2103.379 kb on - strand, within Dshi_1989at 2103.421 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
remove
2,101,909 - -3.7
2,102,173 - -0.1
2,102,258 + Dshi_1987 0.15 -1.0
2,102,258 + Dshi_1987 0.15 +0.2
2,102,266 - Dshi_1987 0.17 +3.2
2,102,278 + Dshi_1987 0.19 -1.5
2,102,286 - Dshi_1987 0.21 +1.1
2,102,286 - Dshi_1987 0.21 -0.6
2,102,466 - Dshi_1987 0.53 +0.7
2,102,652 + Dshi_1987 0.87 +1.2
2,102,868 + Dshi_1988 0.12 -0.8
2,102,947 - Dshi_1988 0.32 -1.8
2,102,968 + Dshi_1988 0.37 +0.2
2,103,008 - Dshi_1988 0.47 +0.2
2,103,200 - -0.8
2,103,261 - -1.1
2,103,296 - +2.6
2,103,355 - Dshi_1989 0.11 +1.2
2,103,371 + Dshi_1989 0.12 +0.4
2,103,379 - Dshi_1989 0.13 +2.8
2,103,421 - +0.2

Or see this region's nucleotide sequence