Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1973

Experiment: m.b. Chlorite 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1972 and Dshi_1973 are separated by 59 nucleotidesDshi_1973 and Dshi_1974 overlap by 4 nucleotides Dshi_1972: Dshi_1972 - GntR domain protein (RefSeq), at 2,085,434 to 2,086,216 _1972 Dshi_1973: Dshi_1973 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 2,086,276 to 2,087,394 _1973 Dshi_1974: Dshi_1974 - hypothetical protein (RefSeq), at 2,087,391 to 2,088,665 _1974 Position (kb) 2086 2087 2088Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2085.502 kb on + strandat 2085.576 kb on + strand, within Dshi_1972at 2085.668 kb on - strand, within Dshi_1972at 2085.857 kb on + strand, within Dshi_1972at 2085.922 kb on - strand, within Dshi_1972at 2086.196 kb on + strandat 2086.243 kb on + strandat 2086.248 kb on + strandat 2086.251 kb on - strandat 2086.469 kb on + strand, within Dshi_1973at 2086.510 kb on - strand, within Dshi_1973at 2086.567 kb on - strand, within Dshi_1973at 2086.578 kb on - strand, within Dshi_1973at 2086.708 kb on + strand, within Dshi_1973at 2086.786 kb on + strand, within Dshi_1973at 2086.875 kb on - strand, within Dshi_1973at 2086.888 kb on + strand, within Dshi_1973at 2086.896 kb on - strand, within Dshi_1973at 2086.968 kb on - strand, within Dshi_1973at 2086.968 kb on - strand, within Dshi_1973at 2087.071 kb on - strand, within Dshi_1973at 2087.220 kb on + strand, within Dshi_1973at 2087.223 kb on - strand, within Dshi_1973at 2087.225 kb on - strand, within Dshi_1973at 2087.340 kb on - strandat 2087.396 kb on - strandat 2087.512 kb on - strandat 2087.568 kb on - strand, within Dshi_1974at 2087.635 kb on - strand, within Dshi_1974at 2087.732 kb on - strand, within Dshi_1974at 2087.763 kb on - strand, within Dshi_1974at 2087.973 kb on + strand, within Dshi_1974at 2087.985 kb on + strand, within Dshi_1974at 2087.993 kb on - strand, within Dshi_1974

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
remove
2,085,502 + -0.2
2,085,576 + Dshi_1972 0.18 -0.6
2,085,668 - Dshi_1972 0.30 -3.0
2,085,857 + Dshi_1972 0.54 -1.1
2,085,922 - Dshi_1972 0.62 +0.2
2,086,196 + -2.9
2,086,243 + +1.8
2,086,248 + -3.8
2,086,251 - -1.8
2,086,469 + Dshi_1973 0.17 +1.8
2,086,510 - Dshi_1973 0.21 +2.8
2,086,567 - Dshi_1973 0.26 -1.1
2,086,578 - Dshi_1973 0.27 +1.6
2,086,708 + Dshi_1973 0.39 -0.4
2,086,786 + Dshi_1973 0.46 +2.6
2,086,875 - Dshi_1973 0.54 -1.1
2,086,888 + Dshi_1973 0.55 -3.1
2,086,896 - Dshi_1973 0.55 -0.4
2,086,968 - Dshi_1973 0.62 -0.2
2,086,968 - Dshi_1973 0.62 +1.2
2,087,071 - Dshi_1973 0.71 +0.1
2,087,220 + Dshi_1973 0.84 +1.2
2,087,223 - Dshi_1973 0.85 -0.5
2,087,225 - Dshi_1973 0.85 +3.4
2,087,340 - +1.8
2,087,396 - +1.2
2,087,512 - -0.2
2,087,568 - Dshi_1974 0.14 -0.3
2,087,635 - Dshi_1974 0.19 +0.2
2,087,732 - Dshi_1974 0.27 +0.2
2,087,763 - Dshi_1974 0.29 +0.2
2,087,973 + Dshi_1974 0.46 -0.4
2,087,985 + Dshi_1974 0.47 +0.2
2,087,993 - Dshi_1974 0.47 -1.1

Or see this region's nucleotide sequence