Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1933 and Dshi_1934 are separated by 351 nucleotides Dshi_1934 and Dshi_1935 are separated by 28 nucleotides
Dshi_1933: Dshi_1933 - isoleucyl-tRNA synthetase (RefSeq), at 2,019,318 to 2,022,293
_1933
Dshi_1934: Dshi_1934 - hypothetical protein (RefSeq), at 2,022,645 to 2,023,316
_1934
Dshi_1935: Dshi_1935 - cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 2,023,345 to 2,024,964
_1935
Position (kb)
2022
2023
2024 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2022.463 kb on + strand at 2022.471 kb on - strand at 2022.471 kb on - strand at 2022.481 kb on - strand at 2022.575 kb on - strand at 2022.579 kb on + strand at 2022.580 kb on + strand at 2022.583 kb on - strand at 2022.588 kb on - strand at 2022.599 kb on - strand at 2022.655 kb on + strand at 2022.673 kb on - strand at 2022.676 kb on + strand at 2022.681 kb on + strand at 2022.682 kb on + strand at 2022.682 kb on + strand at 2022.682 kb on + strand at 2022.682 kb on + strand at 2022.682 kb on + strand at 2022.687 kb on + strand at 2022.689 kb on - strand at 2022.689 kb on - strand at 2022.690 kb on - strand at 2022.690 kb on - strand at 2022.690 kb on - strand at 2022.690 kb on - strand at 2022.690 kb on - strand at 2022.692 kb on + strand at 2022.692 kb on + strand at 2022.692 kb on + strand at 2022.692 kb on + strand at 2022.692 kb on + strand at 2022.692 kb on + strand at 2022.695 kb on - strand at 2022.700 kb on - strand at 2022.700 kb on - strand at 2022.700 kb on - strand at 2022.700 kb on - strand at 2022.700 kb on - strand at 2022.700 kb on - strand at 2022.700 kb on - strand at 2022.702 kb on + strand at 2022.702 kb on + strand at 2022.702 kb on + strand at 2022.702 kb on + strand at 2022.710 kb on - strand at 2022.710 kb on - strand at 2022.713 kb on - strand, within Dshi_1934 at 2022.714 kb on + strand, within Dshi_1934 at 2022.715 kb on - strand, within Dshi_1934 at 2022.722 kb on - strand, within Dshi_1934 at 2022.723 kb on - strand, within Dshi_1934 at 2022.769 kb on - strand, within Dshi_1934 at 2022.816 kb on + strand, within Dshi_1934 at 2022.816 kb on + strand, within Dshi_1934 at 2022.816 kb on - strand, within Dshi_1934 at 2022.831 kb on + strand, within Dshi_1934 at 2022.839 kb on + strand, within Dshi_1934 at 2022.839 kb on + strand, within Dshi_1934 at 2022.839 kb on + strand, within Dshi_1934 at 2022.839 kb on + strand, within Dshi_1934 at 2022.847 kb on - strand, within Dshi_1934 at 2022.847 kb on - strand, within Dshi_1934 at 2022.854 kb on - strand, within Dshi_1934 at 2022.884 kb on - strand, within Dshi_1934 at 2022.916 kb on + strand, within Dshi_1934 at 2022.919 kb on + strand, within Dshi_1934 at 2022.952 kb on + strand, within Dshi_1934 at 2022.967 kb on - strand, within Dshi_1934 at 2022.998 kb on + strand, within Dshi_1934 at 2023.034 kb on - strand, within Dshi_1934 at 2023.126 kb on + strand, within Dshi_1934 at 2023.340 kb on - strand at 2023.576 kb on - strand, within Dshi_1935 at 2023.604 kb on + strand, within Dshi_1935 at 2023.604 kb on + strand, within Dshi_1935 at 2023.604 kb on + strand, within Dshi_1935 at 2023.612 kb on - strand, within Dshi_1935 at 2023.635 kb on - strand, within Dshi_1935 at 2023.658 kb on + strand, within Dshi_1935 at 2023.661 kb on - strand, within Dshi_1935 at 2023.697 kb on - strand, within Dshi_1935 at 2023.793 kb on - strand, within Dshi_1935 at 2023.897 kb on + strand, within Dshi_1935 at 2023.897 kb on + strand, within Dshi_1935 at 2023.905 kb on - strand, within Dshi_1935 at 2023.905 kb on - strand, within Dshi_1935 at 2023.934 kb on - strand, within Dshi_1935 at 2024.152 kb on + strand, within Dshi_1935 at 2024.310 kb on - strand, within Dshi_1935
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 2,022,463 + +0.2 2,022,471 - +1.2 2,022,471 - +0.0 2,022,481 - +0.1 2,022,575 - -0.8 2,022,579 + -1.2 2,022,580 + +1.6 2,022,583 - +1.1 2,022,588 - -0.3 2,022,599 - +0.2 2,022,655 + -1.3 2,022,673 - +2.6 2,022,676 + +1.8 2,022,681 + +2.7 2,022,682 + +0.7 2,022,682 + +2.6 2,022,682 + +0.7 2,022,682 + +1.7 2,022,682 + +1.8 2,022,687 + -1.3 2,022,689 - -0.2 2,022,689 - +2.0 2,022,690 - +0.7 2,022,690 - -2.1 2,022,690 - +0.9 2,022,690 - +0.8 2,022,690 - -0.4 2,022,692 + +2.8 2,022,692 + +0.1 2,022,692 + +3.6 2,022,692 + -0.8 2,022,692 + -0.8 2,022,692 + +0.2 2,022,695 - +0.2 2,022,700 - -2.1 2,022,700 - -0.2 2,022,700 - +1.6 2,022,700 - -0.8 2,022,700 - +0.0 2,022,700 - -0.7 2,022,700 - -0.8 2,022,702 + +2.2 2,022,702 + -0.1 2,022,702 + -0.1 2,022,702 + +0.2 2,022,710 - -3.1 2,022,710 - -0.4 2,022,713 - Dshi_1934 0.10 +3.4 2,022,714 + Dshi_1934 0.10 -0.5 2,022,715 - Dshi_1934 0.10 +0.7 2,022,722 - Dshi_1934 0.11 -0.3 2,022,723 - Dshi_1934 0.12 -2.3 2,022,769 - Dshi_1934 0.18 -1.3 2,022,816 + Dshi_1934 0.25 +3.1 2,022,816 + Dshi_1934 0.25 +0.0 2,022,816 - Dshi_1934 0.25 +0.2 2,022,831 + Dshi_1934 0.28 -2.3 2,022,839 + Dshi_1934 0.29 +0.9 2,022,839 + Dshi_1934 0.29 -0.4 2,022,839 + Dshi_1934 0.29 -2.8 2,022,839 + Dshi_1934 0.29 +1.1 2,022,847 - Dshi_1934 0.30 +1.6 2,022,847 - Dshi_1934 0.30 -0.1 2,022,854 - Dshi_1934 0.31 +0.8 2,022,884 - Dshi_1934 0.36 +0.2 2,022,916 + Dshi_1934 0.40 +3.1 2,022,919 + Dshi_1934 0.41 +1.8 2,022,952 + Dshi_1934 0.46 +1.0 2,022,967 - Dshi_1934 0.48 +0.7 2,022,998 + Dshi_1934 0.53 +0.9 2,023,034 - Dshi_1934 0.58 +0.8 2,023,126 + Dshi_1934 0.72 +0.2 2,023,340 - +0.4 2,023,576 - Dshi_1935 0.14 +0.2 2,023,604 + Dshi_1935 0.16 +0.2 2,023,604 + Dshi_1935 0.16 +2.2 2,023,604 + Dshi_1935 0.16 -0.2 2,023,612 - Dshi_1935 0.16 -2.6 2,023,635 - Dshi_1935 0.18 -0.9 2,023,658 + Dshi_1935 0.19 -2.1 2,023,661 - Dshi_1935 0.20 +0.2 2,023,697 - Dshi_1935 0.22 +0.9 2,023,793 - Dshi_1935 0.28 -1.4 2,023,897 + Dshi_1935 0.34 -2.3 2,023,897 + Dshi_1935 0.34 +0.2 2,023,905 - Dshi_1935 0.35 -0.5 2,023,905 - Dshi_1935 0.35 -0.9 2,023,934 - Dshi_1935 0.36 +0.2 2,024,152 + Dshi_1935 0.50 +1.5 2,024,310 - Dshi_1935 0.60 +1.7
Or see this region's nucleotide sequence