Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1930

Experiment: m.b. Chlorite 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1928 and xerC are separated by 3 nucleotidesxerC and Dshi_1930 are separated by 19 nucleotidesDshi_1930 and Dshi_1931 are separated by 62 nucleotidesDshi_1931 and Dshi_1932 overlap by 4 nucleotides Dshi_1928: Dshi_1928 - protein of unknown function DUF484 (RefSeq), at 2,015,542 to 2,016,249 _1928 Dshi_5002: xerC - hypothetical protein (NCBI), at 2,016,253 to 2,017,179 xerC Dshi_1930: Dshi_1930 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,017,199 to 2,018,038 _1930 Dshi_1931: Dshi_1931 - hypothetical protein (RefSeq), at 2,018,101 to 2,018,352 _1931 Dshi_1932: Dshi_1932 - hypothetical protein (RefSeq), at 2,018,349 to 2,019,218 _1932 Position (kb) 2017 2018 2019Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2016.345 kb on + strandat 2017.121 kb on - strandat 2017.121 kb on - strandat 2017.160 kb on - strandat 2017.173 kb on + strandat 2017.181 kb on - strandat 2017.221 kb on - strandat 2017.573 kb on - strand, within Dshi_1930at 2017.619 kb on + strand, within Dshi_1930at 2017.838 kb on - strand, within Dshi_1930at 2018.082 kb on - strandat 2018.105 kb on - strandat 2018.130 kb on + strand, within Dshi_1931at 2018.341 kb on + strandat 2018.612 kb on - strand, within Dshi_1932at 2018.761 kb on - strand, within Dshi_1932at 2018.815 kb on - strand, within Dshi_1932at 2018.904 kb on + strand, within Dshi_1932

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
remove
2,016,345 + +0.3
2,017,121 - +0.8
2,017,121 - -2.1
2,017,160 - +0.3
2,017,173 + +0.3
2,017,181 - +4.0
2,017,221 - -2.2
2,017,573 - Dshi_1930 0.45 -0.7
2,017,619 + Dshi_1930 0.50 +1.3
2,017,838 - Dshi_1930 0.76 +0.6
2,018,082 - -2.6
2,018,105 - +3.2
2,018,130 + Dshi_1931 0.12 -1.5
2,018,341 + +0.7
2,018,612 - Dshi_1932 0.30 -2.3
2,018,761 - Dshi_1932 0.47 +1.2
2,018,815 - Dshi_1932 0.54 +0.2
2,018,904 + Dshi_1932 0.64 +0.5

Or see this region's nucleotide sequence