Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1819 and Dshi_R0036 are separated by 158 nucleotides Dshi_R0036 and Dshi_1820 are separated by 100 nucleotides Dshi_1820 and Dshi_1821 overlap by 8 nucleotides
Dshi_1819: Dshi_1819 - transcriptional regulator, LuxR family (RefSeq), at 1,897,085 to 1,897,816
_1819
Dshi_R0036: Dshi_R0036 - tRNA-Val (RefSeq), at 1,897,975 to 1,898,050
_R0036
Dshi_1820: Dshi_1820 - mannosyl-3-phosphoglycerate phosphatase family (RefSeq), at 1,898,151 to 1,898,933
_1820
Dshi_1821: Dshi_1821 - glycosyltransferase involved in cell wall biogenesis (RefSeq), at 1,898,926 to 1,900,176
_1821
Position (kb)
1898
1899 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1897.153 kb on - strand at 1897.236 kb on + strand, within Dshi_1819 at 1897.244 kb on - strand, within Dshi_1819 at 1897.270 kb on - strand, within Dshi_1819 at 1897.270 kb on - strand, within Dshi_1819 at 1897.320 kb on + strand, within Dshi_1819 at 1897.445 kb on + strand, within Dshi_1819 at 1897.466 kb on + strand, within Dshi_1819 at 1897.474 kb on - strand, within Dshi_1819 at 1897.596 kb on + strand, within Dshi_1819 at 1897.673 kb on + strand, within Dshi_1819 at 1897.699 kb on + strand, within Dshi_1819 at 1897.717 kb on - strand, within Dshi_1819 at 1897.728 kb on - strand, within Dshi_1819 at 1897.728 kb on - strand, within Dshi_1819 at 1897.752 kb on + strand at 1898.113 kb on - strand at 1898.235 kb on - strand, within Dshi_1820 at 1898.235 kb on - strand, within Dshi_1820 at 1898.240 kb on - strand, within Dshi_1820 at 1898.272 kb on + strand, within Dshi_1820 at 1898.280 kb on - strand, within Dshi_1820 at 1898.295 kb on - strand, within Dshi_1820 at 1898.296 kb on - strand, within Dshi_1820 at 1898.333 kb on - strand, within Dshi_1820 at 1898.399 kb on + strand, within Dshi_1820 at 1898.689 kb on - strand, within Dshi_1820 at 1898.717 kb on + strand, within Dshi_1820 at 1898.771 kb on + strand, within Dshi_1820 at 1899.038 kb on - strand at 1899.083 kb on + strand, within Dshi_1821 at 1899.088 kb on + strand, within Dshi_1821 at 1899.098 kb on + strand, within Dshi_1821 at 1899.098 kb on + strand, within Dshi_1821 at 1899.197 kb on - strand, within Dshi_1821 at 1899.268 kb on + strand, within Dshi_1821 at 1899.358 kb on - strand, within Dshi_1821 at 1899.361 kb on + strand, within Dshi_1821 at 1899.400 kb on + strand, within Dshi_1821 at 1899.400 kb on + strand, within Dshi_1821 at 1899.469 kb on - strand, within Dshi_1821 at 1899.485 kb on + strand, within Dshi_1821 at 1899.547 kb on + strand, within Dshi_1821 at 1899.598 kb on - strand, within Dshi_1821 at 1899.639 kb on + strand, within Dshi_1821 at 1899.675 kb on + strand, within Dshi_1821 at 1899.710 kb on - strand, within Dshi_1821 at 1899.829 kb on + strand, within Dshi_1821 at 1899.889 kb on - strand, within Dshi_1821 at 1899.899 kb on + strand, within Dshi_1821 at 1899.899 kb on + strand, within Dshi_1821 at 1899.899 kb on + strand, within Dshi_1821 at 1899.899 kb on + strand, within Dshi_1821 at 1899.899 kb on + strand, within Dshi_1821 at 1899.899 kb on + strand, within Dshi_1821 at 1899.907 kb on - strand, within Dshi_1821 at 1899.919 kb on - strand, within Dshi_1821
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 1,897,153 - +1.2 1,897,236 + Dshi_1819 0.21 +0.2 1,897,244 - Dshi_1819 0.22 +2.2 1,897,270 - Dshi_1819 0.25 +2.1 1,897,270 - Dshi_1819 0.25 -0.4 1,897,320 + Dshi_1819 0.32 +2.2 1,897,445 + Dshi_1819 0.49 -0.4 1,897,466 + Dshi_1819 0.52 -2.6 1,897,474 - Dshi_1819 0.53 -0.2 1,897,596 + Dshi_1819 0.70 +2.2 1,897,673 + Dshi_1819 0.80 +0.5 1,897,699 + Dshi_1819 0.84 +0.2 1,897,717 - Dshi_1819 0.86 +3.5 1,897,728 - Dshi_1819 0.88 -0.5 1,897,728 - Dshi_1819 0.88 -1.5 1,897,752 + -0.6 1,898,113 - +0.2 1,898,235 - Dshi_1820 0.11 -0.4 1,898,235 - Dshi_1820 0.11 +0.5 1,898,240 - Dshi_1820 0.11 +2.2 1,898,272 + Dshi_1820 0.15 +1.6 1,898,280 - Dshi_1820 0.16 -0.5 1,898,295 - Dshi_1820 0.18 -1.4 1,898,296 - Dshi_1820 0.19 +0.7 1,898,333 - Dshi_1820 0.23 -1.6 1,898,399 + Dshi_1820 0.32 -1.1 1,898,689 - Dshi_1820 0.69 +0.2 1,898,717 + Dshi_1820 0.72 -1.0 1,898,771 + Dshi_1820 0.79 -1.7 1,899,038 - -0.4 1,899,083 + Dshi_1821 0.13 +0.4 1,899,088 + Dshi_1821 0.13 -1.5 1,899,098 + Dshi_1821 0.14 +0.6 1,899,098 + Dshi_1821 0.14 -0.6 1,899,197 - Dshi_1821 0.22 +1.2 1,899,268 + Dshi_1821 0.27 -0.8 1,899,358 - Dshi_1821 0.35 +3.4 1,899,361 + Dshi_1821 0.35 -1.6 1,899,400 + Dshi_1821 0.38 +0.1 1,899,400 + Dshi_1821 0.38 -0.3 1,899,469 - Dshi_1821 0.43 -1.8 1,899,485 + Dshi_1821 0.45 -0.1 1,899,547 + Dshi_1821 0.50 +0.2 1,899,598 - Dshi_1821 0.54 -0.2 1,899,639 + Dshi_1821 0.57 -0.6 1,899,675 + Dshi_1821 0.60 +0.1 1,899,710 - Dshi_1821 0.63 +0.5 1,899,829 + Dshi_1821 0.72 +2.7 1,899,889 - Dshi_1821 0.77 -0.8 1,899,899 + Dshi_1821 0.78 -3.3 1,899,899 + Dshi_1821 0.78 -1.7 1,899,899 + Dshi_1821 0.78 -0.1 1,899,899 + Dshi_1821 0.78 -3.1 1,899,899 + Dshi_1821 0.78 +0.5 1,899,899 + Dshi_1821 0.78 +0.2 1,899,907 - Dshi_1821 0.78 -1.8 1,899,919 - Dshi_1821 0.79 +0.2
Or see this region's nucleotide sequence