Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1725

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1724 and Dshi_1725 overlap by 1 nucleotidesDshi_1725 and Dshi_1726 are separated by 22 nucleotides Dshi_1724: Dshi_1724 - segregation and condensation protein B (RefSeq), at 1,791,066 to 1,791,755 _1724 Dshi_1725: Dshi_1725 - chromosome segregation and condensation protein ScpA (RefSeq), at 1,791,755 to 1,792,549 _1725 Dshi_1726: Dshi_1726 - Beta-N-acetylhexosaminidase (RefSeq), at 1,792,572 to 1,793,558 _1726 Position (kb) 1791 1792 1793Strain fitness (log2 ratio) -2 -1 0 1 2at 1790.834 kb on - strandat 1790.944 kb on + strandat 1791.022 kb on + strandat 1791.794 kb on - strandat 1792.108 kb on - strand, within Dshi_1725at 1792.396 kb on - strand, within Dshi_1725at 1792.647 kb on - strandat 1792.805 kb on + strand, within Dshi_1726at 1792.933 kb on + strand, within Dshi_1726at 1793.122 kb on - strand, within Dshi_1726at 1793.505 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,790,834 - +0.0
1,790,944 + +0.3
1,791,022 + -0.7
1,791,794 - -0.2
1,792,108 - Dshi_1725 0.44 +2.5
1,792,396 - Dshi_1725 0.81 +0.4
1,792,647 - -1.4
1,792,805 + Dshi_1726 0.24 -2.1
1,792,933 + Dshi_1726 0.37 +0.6
1,793,122 - Dshi_1726 0.56 -0.1
1,793,505 + +0.4

Or see this region's nucleotide sequence