Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1714

Experiment: m.b. Chlorite 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1713 and Dshi_1714 are separated by 355 nucleotidesDshi_1714 and Dshi_1715 are separated by 185 nucleotides Dshi_1713: Dshi_1713 - phosphoribosylformylglycinamidine synthase II (RefSeq), at 1,779,001 to 1,781,172 _1713 Dshi_1714: Dshi_1714 - ABC transporter related (RefSeq), at 1,781,528 to 1,783,372 _1714 Dshi_1715: Dshi_1715 - sulfotransferase (RefSeq), at 1,783,558 to 1,784,403 _1715 Position (kb) 1781 1782 1783 1784Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1780.856 kb on - strand, within Dshi_1713at 1780.950 kb on + strand, within Dshi_1713at 1780.950 kb on + strand, within Dshi_1713at 1781.133 kb on + strandat 1781.133 kb on + strandat 1781.134 kb on - strandat 1781.184 kb on + strandat 1781.309 kb on - strandat 1781.309 kb on - strandat 1781.358 kb on + strandat 1781.403 kb on + strandat 1781.403 kb on + strandat 1781.454 kb on + strandat 1781.504 kb on - strandat 1781.510 kb on + strandat 1781.518 kb on - strandat 1781.518 kb on - strandat 1781.570 kb on + strandat 1781.606 kb on - strandat 1781.606 kb on - strandat 1781.642 kb on + strandat 1781.700 kb on - strandat 1781.716 kb on - strand, within Dshi_1714at 1781.753 kb on - strand, within Dshi_1714at 1781.757 kb on + strand, within Dshi_1714at 1781.893 kb on - strand, within Dshi_1714at 1782.013 kb on + strand, within Dshi_1714at 1782.048 kb on - strand, within Dshi_1714at 1782.235 kb on - strand, within Dshi_1714at 1782.416 kb on + strand, within Dshi_1714at 1782.671 kb on + strand, within Dshi_1714at 1782.872 kb on - strand, within Dshi_1714at 1783.011 kb on - strand, within Dshi_1714at 1783.068 kb on - strand, within Dshi_1714at 1783.280 kb on - strandat 1783.286 kb on - strandat 1783.553 kb on - strandat 1783.580 kb on - strandat 1783.625 kb on - strandat 1783.731 kb on + strand, within Dshi_1715at 1783.877 kb on + strand, within Dshi_1715at 1784.158 kb on - strand, within Dshi_1715at 1784.276 kb on - strand, within Dshi_1715at 1784.365 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
remove
1,780,856 - Dshi_1713 0.85 -1.3
1,780,950 + Dshi_1713 0.90 -0.3
1,780,950 + Dshi_1713 0.90 -1.8
1,781,133 + -1.6
1,781,133 + -2.3
1,781,134 - +0.0
1,781,184 + -0.2
1,781,309 - +2.1
1,781,309 - +1.8
1,781,358 + -0.4
1,781,403 + +2.8
1,781,403 + +1.1
1,781,454 + +1.8
1,781,504 - +0.2
1,781,510 + +1.2
1,781,518 - -1.7
1,781,518 - -2.2
1,781,570 + -1.1
1,781,606 - +1.8
1,781,606 - -0.9
1,781,642 + -0.4
1,781,700 - +0.1
1,781,716 - Dshi_1714 0.10 +0.7
1,781,753 - Dshi_1714 0.12 +0.9
1,781,757 + Dshi_1714 0.12 +0.3
1,781,893 - Dshi_1714 0.20 +0.8
1,782,013 + Dshi_1714 0.26 -0.4
1,782,048 - Dshi_1714 0.28 +0.4
1,782,235 - Dshi_1714 0.38 +1.6
1,782,416 + Dshi_1714 0.48 -0.8
1,782,671 + Dshi_1714 0.62 +1.8
1,782,872 - Dshi_1714 0.73 -2.1
1,783,011 - Dshi_1714 0.80 +2.2
1,783,068 - Dshi_1714 0.83 +2.1
1,783,280 - +1.2
1,783,286 - +1.2
1,783,553 - +1.8
1,783,580 - +0.5
1,783,625 - +2.0
1,783,731 + Dshi_1715 0.20 -0.1
1,783,877 + Dshi_1715 0.38 +1.2
1,784,158 - Dshi_1715 0.71 -0.7
1,784,276 - Dshi_1715 0.85 +0.8
1,784,365 + -0.3

Or see this region's nucleotide sequence