Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1388

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1387 and Dshi_1388 are separated by 207 nucleotidesDshi_1388 and Dshi_1389 are separated by 236 nucleotides Dshi_1387: Dshi_1387 - ATP-dependent Clp protease, ATP-binding subunit ClpX (RefSeq), at 1,440,553 to 1,441,812 _1387 Dshi_1388: Dshi_1388 - Endopeptidase Clp (RefSeq), at 1,442,020 to 1,442,646 _1388 Dshi_1389: Dshi_1389 - deoxyribodipyrimidine photo-lyase, putative (RefSeq), at 1,442,883 to 1,444,100 _1389 Position (kb) 1442 1443Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1441.519 kb on + strand, within Dshi_1387at 1441.527 kb on - strand, within Dshi_1387at 1441.727 kb on + strandat 1441.981 kb on + strandat 1441.989 kb on - strandat 1441.991 kb on + strandat 1442.080 kb on - strandat 1442.697 kb on + strandat 1442.721 kb on + strandat 1442.729 kb on - strandat 1442.785 kb on - strandat 1442.854 kb on - strandat 1442.872 kb on + strandat 1442.873 kb on + strandat 1442.922 kb on + strandat 1443.081 kb on - strand, within Dshi_1389at 1443.162 kb on - strand, within Dshi_1389at 1443.191 kb on - strand, within Dshi_1389at 1443.200 kb on + strand, within Dshi_1389at 1443.286 kb on + strand, within Dshi_1389at 1443.311 kb on + strand, within Dshi_1389at 1443.422 kb on + strand, within Dshi_1389at 1443.474 kb on + strand, within Dshi_1389at 1443.483 kb on - strand, within Dshi_1389at 1443.491 kb on + strand, within Dshi_1389at 1443.491 kb on + strand, within Dshi_1389at 1443.547 kb on - strand, within Dshi_1389at 1443.586 kb on - strand, within Dshi_1389

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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1,441,519 + Dshi_1387 0.77 -3.5
1,441,527 - Dshi_1387 0.77 -2.0
1,441,727 + +1.8
1,441,981 + -0.5
1,441,989 - -0.1
1,441,991 + +0.2
1,442,080 - -1.8
1,442,697 + +1.2
1,442,721 + +0.1
1,442,729 - +0.2
1,442,785 - +1.0
1,442,854 - +0.2
1,442,872 + +1.2
1,442,873 + +1.0
1,442,922 + -1.0
1,443,081 - Dshi_1389 0.16 -1.2
1,443,162 - Dshi_1389 0.23 +2.2
1,443,191 - Dshi_1389 0.25 +0.6
1,443,200 + Dshi_1389 0.26 +0.3
1,443,286 + Dshi_1389 0.33 +1.2
1,443,311 + Dshi_1389 0.35 +2.2
1,443,422 + Dshi_1389 0.44 +1.2
1,443,474 + Dshi_1389 0.49 -1.3
1,443,483 - Dshi_1389 0.49 -1.3
1,443,491 + Dshi_1389 0.50 -1.2
1,443,491 + Dshi_1389 0.50 +0.2
1,443,547 - Dshi_1389 0.55 -2.1
1,443,586 - Dshi_1389 0.58 +2.5

Or see this region's nucleotide sequence