Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0981 and Dshi_0982 are separated by 149 nucleotides Dshi_0982 and Dshi_0983 are separated by 2 nucleotides Dshi_0983 and Dshi_0984 overlap by 4 nucleotides Dshi_0984 and Dshi_R0023 are separated by 292 nucleotides Dshi_R0023 and Dshi_0985 are separated by 423 nucleotides
Dshi_0981: Dshi_0981 - protein tyrosine phosphatase (RefSeq), at 1,002,333 to 1,002,788
_0981
Dshi_0982: Dshi_0982 - translation initiation factor IF-1 (RefSeq), at 1,002,938 to 1,003,156
_0982
Dshi_0983: Dshi_0983 - maf protein (RefSeq), at 1,003,159 to 1,003,743
_0983
Dshi_0984: Dshi_0984 - ribonuclease (RefSeq), at 1,003,740 to 1,004,783
_0984
Dshi_R0023: Dshi_R0023 - tRNA-Phe (RefSeq), at 1,005,076 to 1,005,150
_R0023
Dshi_0985: Dshi_0985 - hypothetical protein (RefSeq), at 1,005,574 to 1,005,831
_0985
Position (kb)
1003
1004
1005 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1003.232 kb on - strand, within Dshi_0983 at 1003.381 kb on + strand, within Dshi_0983 at 1003.496 kb on + strand, within Dshi_0983 at 1003.531 kb on + strand, within Dshi_0983 at 1003.602 kb on + strand, within Dshi_0983 at 1003.658 kb on - strand, within Dshi_0983 at 1003.680 kb on - strand, within Dshi_0983 at 1003.715 kb on + strand at 1003.715 kb on + strand at 1003.991 kb on + strand, within Dshi_0984 at 1004.045 kb on + strand, within Dshi_0984 at 1004.191 kb on + strand, within Dshi_0984 at 1004.260 kb on - strand, within Dshi_0984 at 1004.260 kb on - strand, within Dshi_0984 at 1004.260 kb on - strand, within Dshi_0984 at 1004.297 kb on + strand, within Dshi_0984 at 1004.431 kb on + strand, within Dshi_0984 at 1004.444 kb on + strand, within Dshi_0984 at 1004.444 kb on + strand, within Dshi_0984 at 1004.484 kb on - strand, within Dshi_0984 at 1004.598 kb on + strand, within Dshi_0984 at 1004.598 kb on - strand, within Dshi_0984 at 1004.693 kb on + strand at 1004.715 kb on + strand at 1004.716 kb on + strand at 1004.725 kb on + strand at 1004.785 kb on - strand at 1004.787 kb on + strand at 1004.818 kb on - strand at 1004.863 kb on - strand at 1004.928 kb on - strand at 1004.980 kb on + strand at 1005.318 kb on - strand at 1005.322 kb on + strand at 1005.358 kb on - strand at 1005.574 kb on - strand at 1005.593 kb on - strand at 1005.596 kb on + strand at 1005.695 kb on + strand, within Dshi_0985 at 1005.731 kb on - strand, within Dshi_0985 at 1005.731 kb on - strand, within Dshi_0985 at 1005.743 kb on + strand, within Dshi_0985 at 1005.748 kb on + strand, within Dshi_0985 at 1005.748 kb on + strand, within Dshi_0985
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 1,003,232 - Dshi_0983 0.12 +1.6 1,003,381 + Dshi_0983 0.38 +0.9 1,003,496 + Dshi_0983 0.58 +0.1 1,003,531 + Dshi_0983 0.64 -1.5 1,003,602 + Dshi_0983 0.76 -2.0 1,003,658 - Dshi_0983 0.85 +1.2 1,003,680 - Dshi_0983 0.89 -0.1 1,003,715 + +3.7 1,003,715 + -1.8 1,003,991 + Dshi_0984 0.24 -1.3 1,004,045 + Dshi_0984 0.29 -1.2 1,004,191 + Dshi_0984 0.43 -0.1 1,004,260 - Dshi_0984 0.50 -0.2 1,004,260 - Dshi_0984 0.50 +1.0 1,004,260 - Dshi_0984 0.50 -0.1 1,004,297 + Dshi_0984 0.53 +0.8 1,004,431 + Dshi_0984 0.66 +0.1 1,004,444 + Dshi_0984 0.67 +0.8 1,004,444 + Dshi_0984 0.67 -0.5 1,004,484 - Dshi_0984 0.71 +1.9 1,004,598 + Dshi_0984 0.82 -2.3 1,004,598 - Dshi_0984 0.82 -0.3 1,004,693 + -1.6 1,004,715 + -2.0 1,004,716 + +1.0 1,004,725 + +1.5 1,004,785 - -0.6 1,004,787 + +2.3 1,004,818 - +0.0 1,004,863 - +2.7 1,004,928 - -1.0 1,004,980 + -0.7 1,005,318 - +1.0 1,005,322 + +0.1 1,005,358 - +0.9 1,005,574 - +1.5 1,005,593 - -0.9 1,005,596 + -1.3 1,005,695 + Dshi_0985 0.47 +0.3 1,005,731 - Dshi_0985 0.61 -0.8 1,005,731 - Dshi_0985 0.61 -0.5 1,005,743 + Dshi_0985 0.66 +0.1 1,005,748 + Dshi_0985 0.67 +0.1 1,005,748 + Dshi_0985 0.67 -1.8
Or see this region's nucleotide sequence