Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0930 and Dshi_0931 are separated by 30 nucleotides Dshi_0931 and Dshi_0932 are separated by 13 nucleotides
Dshi_0930: Dshi_0930 - sodium/hydrogen exchanger (RefSeq), at 953,550 to 955,277
_0930
Dshi_0931: Dshi_0931 - Alcohol dehydrogenase GroES domain protein (RefSeq), at 955,308 to 956,327
_0931
Dshi_0932: Dshi_0932 - ATPase, P-type (transporting), HAD superfamily, subfamily IC (RefSeq), at 956,341 to 959,109
_0932
Position (kb) 955
956
957 Strain fitness (log2 ratio) -1
0
1
2
3 at 954.310 kb on - strand, within Dshi_0930 at 954.583 kb on - strand, within Dshi_0930 at 954.603 kb on - strand, within Dshi_0930 at 954.608 kb on + strand, within Dshi_0930 at 954.793 kb on + strand, within Dshi_0930 at 954.831 kb on + strand, within Dshi_0930 at 954.837 kb on - strand, within Dshi_0930 at 954.905 kb on - strand, within Dshi_0930 at 954.971 kb on - strand, within Dshi_0930 at 954.971 kb on - strand, within Dshi_0930 at 954.987 kb on - strand, within Dshi_0930 at 955.016 kb on + strand, within Dshi_0930 at 955.016 kb on + strand, within Dshi_0930 at 955.018 kb on - strand, within Dshi_0930 at 955.061 kb on - strand, within Dshi_0930 at 955.306 kb on - strand at 955.341 kb on + strand at 955.341 kb on + strand at 955.383 kb on + strand at 955.445 kb on + strand, within Dshi_0931 at 955.463 kb on + strand, within Dshi_0931 at 955.537 kb on - strand, within Dshi_0931 at 955.558 kb on - strand, within Dshi_0931 at 955.571 kb on + strand, within Dshi_0931 at 955.581 kb on - strand, within Dshi_0931 at 955.602 kb on - strand, within Dshi_0931 at 955.629 kb on - strand, within Dshi_0931 at 955.680 kb on - strand, within Dshi_0931 at 955.704 kb on + strand, within Dshi_0931 at 955.815 kb on + strand, within Dshi_0931 at 955.845 kb on - strand, within Dshi_0931 at 955.870 kb on + strand, within Dshi_0931 at 955.937 kb on - strand, within Dshi_0931 at 955.942 kb on + strand, within Dshi_0931 at 955.952 kb on - strand, within Dshi_0931 at 956.169 kb on - strand, within Dshi_0931 at 956.267 kb on + strand at 956.346 kb on + strand at 956.378 kb on - strand at 956.378 kb on - strand at 956.446 kb on + strand at 956.496 kb on + strand at 956.537 kb on + strand at 956.657 kb on + strand, within Dshi_0932 at 956.689 kb on - strand, within Dshi_0932 at 956.706 kb on - strand, within Dshi_0932 at 956.725 kb on + strand, within Dshi_0932 at 956.733 kb on - strand, within Dshi_0932 at 956.733 kb on - strand, within Dshi_0932 at 956.835 kb on - strand, within Dshi_0932 at 956.841 kb on - strand, within Dshi_0932
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 954,310 - Dshi_0930 0.44 +1.7 954,583 - Dshi_0930 0.60 +1.3 954,603 - Dshi_0930 0.61 +0.8 954,608 + Dshi_0930 0.61 +0.1 954,793 + Dshi_0930 0.72 +0.1 954,831 + Dshi_0930 0.74 -1.2 954,837 - Dshi_0930 0.74 -0.7 954,905 - Dshi_0930 0.78 +0.7 954,971 - Dshi_0930 0.82 -1.0 954,971 - Dshi_0930 0.82 -0.7 954,987 - Dshi_0930 0.83 -0.3 955,016 + Dshi_0930 0.85 -1.5 955,016 + Dshi_0930 0.85 -0.2 955,018 - Dshi_0930 0.85 +0.4 955,061 - Dshi_0930 0.87 +2.0 955,306 - -1.5 955,341 + -0.5 955,341 + -0.2 955,383 + -0.3 955,445 + Dshi_0931 0.13 +1.1 955,463 + Dshi_0931 0.15 -0.5 955,537 - Dshi_0931 0.22 +0.8 955,558 - Dshi_0931 0.25 +1.8 955,571 + Dshi_0931 0.26 -0.5 955,581 - Dshi_0931 0.27 +0.3 955,602 - Dshi_0931 0.29 +1.3 955,629 - Dshi_0931 0.31 +2.0 955,680 - Dshi_0931 0.36 +1.0 955,704 + Dshi_0931 0.39 -0.7 955,815 + Dshi_0931 0.50 -1.3 955,845 - Dshi_0931 0.53 -0.4 955,870 + Dshi_0931 0.55 -1.0 955,937 - Dshi_0931 0.62 +0.5 955,942 + Dshi_0931 0.62 -0.2 955,952 - Dshi_0931 0.63 +3.2 956,169 - Dshi_0931 0.84 +2.3 956,267 + +1.5 956,346 + -0.8 956,378 - -0.7 956,378 - +0.8 956,446 + +0.3 956,496 + +0.5 956,537 + -0.3 956,657 + Dshi_0932 0.11 -0.2 956,689 - Dshi_0932 0.13 -0.2 956,706 - Dshi_0932 0.13 +2.4 956,725 + Dshi_0932 0.14 +0.3 956,733 - Dshi_0932 0.14 +0.8 956,733 - Dshi_0932 0.14 -0.7 956,835 - Dshi_0932 0.18 -0.7 956,841 - Dshi_0932 0.18 +0.9
Or see this region's nucleotide sequence