Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0600

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0599 and Dshi_0600 are separated by 46 nucleotidesDshi_0600 and Dshi_0601 are separated by 253 nucleotides Dshi_0599: Dshi_0599 - deoxyribodipyrimidine photolyase-related protein (RefSeq), at 590,437 to 591,963 _0599 Dshi_0600: Dshi_0600 - MORN repeat-containing protein (RefSeq), at 592,010 to 593,416 _0600 Dshi_0601: Dshi_0601 - NAD+ synthetase (RefSeq), at 593,670 to 595,343 _0601 Position (kb) 592 593 594Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 591.028 kb on - strand, within Dshi_0599at 591.043 kb on - strand, within Dshi_0599at 591.095 kb on - strand, within Dshi_0599at 591.157 kb on + strand, within Dshi_0599at 591.157 kb on + strand, within Dshi_0599at 591.165 kb on - strand, within Dshi_0599at 591.232 kb on + strand, within Dshi_0599at 591.240 kb on - strand, within Dshi_0599at 591.240 kb on - strand, within Dshi_0599at 591.255 kb on - strand, within Dshi_0599at 591.255 kb on - strand, within Dshi_0599at 591.301 kb on + strand, within Dshi_0599at 591.320 kb on + strand, within Dshi_0599at 591.320 kb on + strand, within Dshi_0599at 591.320 kb on - strand, within Dshi_0599at 591.322 kb on + strand, within Dshi_0599at 591.322 kb on + strand, within Dshi_0599at 591.322 kb on + strand, within Dshi_0599at 591.381 kb on + strand, within Dshi_0599at 591.404 kb on - strand, within Dshi_0599at 591.419 kb on + strand, within Dshi_0599at 591.449 kb on + strand, within Dshi_0599at 591.460 kb on + strand, within Dshi_0599at 591.477 kb on + strand, within Dshi_0599at 591.490 kb on + strand, within Dshi_0599at 591.505 kb on - strand, within Dshi_0599at 591.507 kb on + strand, within Dshi_0599at 591.507 kb on + strand, within Dshi_0599at 591.507 kb on + strand, within Dshi_0599at 591.517 kb on + strand, within Dshi_0599at 591.524 kb on + strand, within Dshi_0599at 591.569 kb on - strand, within Dshi_0599at 591.586 kb on + strand, within Dshi_0599at 591.633 kb on + strand, within Dshi_0599at 591.643 kb on - strand, within Dshi_0599at 591.643 kb on - strand, within Dshi_0599at 591.649 kb on + strand, within Dshi_0599at 591.658 kb on - strand, within Dshi_0599at 591.686 kb on - strand, within Dshi_0599at 591.691 kb on + strand, within Dshi_0599at 591.697 kb on + strand, within Dshi_0599at 591.697 kb on + strand, within Dshi_0599at 591.716 kb on - strand, within Dshi_0599at 591.750 kb on - strand, within Dshi_0599at 591.770 kb on - strand, within Dshi_0599at 591.859 kb on + strandat 591.864 kb on - strandat 591.864 kb on - strandat 591.984 kb on + strandat 592.049 kb on - strandat 592.082 kb on - strandat 592.095 kb on - strandat 592.106 kb on + strandat 592.106 kb on + strandat 592.107 kb on + strandat 592.114 kb on - strandat 592.114 kb on - strandat 592.117 kb on + strandat 592.151 kb on - strand, within Dshi_0600at 592.162 kb on - strand, within Dshi_0600at 592.259 kb on - strand, within Dshi_0600at 592.336 kb on + strand, within Dshi_0600at 592.397 kb on - strand, within Dshi_0600at 592.406 kb on + strand, within Dshi_0600at 592.470 kb on - strand, within Dshi_0600at 592.509 kb on - strand, within Dshi_0600at 592.886 kb on + strand, within Dshi_0600at 592.899 kb on + strand, within Dshi_0600at 592.901 kb on + strand, within Dshi_0600at 593.047 kb on - strand, within Dshi_0600at 593.225 kb on - strand, within Dshi_0600at 593.241 kb on - strand, within Dshi_0600at 593.259 kb on + strand, within Dshi_0600at 593.259 kb on + strand, within Dshi_0600at 593.269 kb on + strand, within Dshi_0600at 593.269 kb on + strand, within Dshi_0600at 593.277 kb on - strandat 593.277 kb on - strandat 593.277 kb on - strandat 593.277 kb on - strandat 593.277 kb on - strandat 593.286 kb on - strandat 593.366 kb on - strandat 593.387 kb on + strandat 593.409 kb on - strandat 593.435 kb on - strandat 593.498 kb on + strandat 593.520 kb on + strandat 593.528 kb on - strandat 593.565 kb on + strandat 593.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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591,028 - Dshi_0599 0.39 -0.4
591,043 - Dshi_0599 0.40 -1.2
591,095 - Dshi_0599 0.43 -0.8
591,157 + Dshi_0599 0.47 -0.8
591,157 + Dshi_0599 0.47 -0.5
591,165 - Dshi_0599 0.48 +0.2
591,232 + Dshi_0599 0.52 -0.7
591,240 - Dshi_0599 0.53 +0.2
591,240 - Dshi_0599 0.53 +0.1
591,255 - Dshi_0599 0.54 +0.8
591,255 - Dshi_0599 0.54 -0.4
591,301 + Dshi_0599 0.57 -1.7
591,320 + Dshi_0599 0.58 +0.1
591,320 + Dshi_0599 0.58 +0.4
591,320 - Dshi_0599 0.58 -0.0
591,322 + Dshi_0599 0.58 -0.4
591,322 + Dshi_0599 0.58 -0.4
591,322 + Dshi_0599 0.58 +2.2
591,381 + Dshi_0599 0.62 +0.5
591,404 - Dshi_0599 0.63 -1.7
591,419 + Dshi_0599 0.64 +3.4
591,449 + Dshi_0599 0.66 +0.5
591,460 + Dshi_0599 0.67 -0.9
591,477 + Dshi_0599 0.68 -0.9
591,490 + Dshi_0599 0.69 +3.8
591,505 - Dshi_0599 0.70 -1.9
591,507 + Dshi_0599 0.70 +0.2
591,507 + Dshi_0599 0.70 +0.3
591,507 + Dshi_0599 0.70 -0.1
591,517 + Dshi_0599 0.71 +1.0
591,524 + Dshi_0599 0.71 +0.2
591,569 - Dshi_0599 0.74 +0.4
591,586 + Dshi_0599 0.75 -1.1
591,633 + Dshi_0599 0.78 -1.6
591,643 - Dshi_0599 0.79 -0.2
591,643 - Dshi_0599 0.79 -1.4
591,649 + Dshi_0599 0.79 +1.8
591,658 - Dshi_0599 0.80 -1.0
591,686 - Dshi_0599 0.82 +0.5
591,691 + Dshi_0599 0.82 +0.9
591,697 + Dshi_0599 0.83 -0.3
591,697 + Dshi_0599 0.83 -2.3
591,716 - Dshi_0599 0.84 +0.2
591,750 - Dshi_0599 0.86 +0.1
591,770 - Dshi_0599 0.87 +0.7
591,859 + -0.2
591,864 - -1.0
591,864 - +0.2
591,984 + +2.1
592,049 - -0.8
592,082 - -0.8
592,095 - -1.0
592,106 + -0.0
592,106 + -1.2
592,107 + -0.2
592,114 - +0.1
592,114 - +0.3
592,117 + -1.2
592,151 - Dshi_0600 0.10 -2.4
592,162 - Dshi_0600 0.11 +1.2
592,259 - Dshi_0600 0.18 -1.2
592,336 + Dshi_0600 0.23 +1.6
592,397 - Dshi_0600 0.28 +0.5
592,406 + Dshi_0600 0.28 -0.4
592,470 - Dshi_0600 0.33 -0.5
592,509 - Dshi_0600 0.35 -0.4
592,886 + Dshi_0600 0.62 +0.2
592,899 + Dshi_0600 0.63 +0.2
592,901 + Dshi_0600 0.63 +1.8
593,047 - Dshi_0600 0.74 +0.1
593,225 - Dshi_0600 0.86 +1.2
593,241 - Dshi_0600 0.87 -0.5
593,259 + Dshi_0600 0.89 +0.2
593,259 + Dshi_0600 0.89 -0.8
593,269 + Dshi_0600 0.89 +1.6
593,269 + Dshi_0600 0.89 -0.9
593,277 - +0.4
593,277 - -0.5
593,277 - -2.1
593,277 - -1.7
593,277 - +2.0
593,286 - +1.2
593,366 - -1.5
593,387 + -0.6
593,409 - -1.8
593,435 - -0.5
593,498 + -0.8
593,520 + +2.2
593,528 - -0.9
593,565 + +1.2
593,573 - -2.6

Or see this region's nucleotide sequence