Experiment: m.b. Chlorite 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0589 and Dshi_0590 are separated by 33 nucleotides Dshi_0590 and Dshi_0591 are separated by 9 nucleotides Dshi_0591 and Dshi_0592 overlap by 4 nucleotides
Dshi_0589: Dshi_0589 - hypothetical protein (RefSeq), at 579,497 to 580,282
_0589
Dshi_0590: Dshi_0590 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 580,316 to 581,251
_0590
Dshi_0591: Dshi_0591 - rod shape-determining protein RodA (RefSeq), at 581,261 to 582,400
_0591
Dshi_0592: Dshi_0592 - Peptidoglycan glycosyltransferase (RefSeq), at 582,397 to 584,340
_0592
Position (kb) 581
582
583 Strain fitness (log2 ratio) -2
-1
0
1
2 at 580.440 kb on + strand, within Dshi_0590 at 580.443 kb on - strand, within Dshi_0590 at 580.523 kb on - strand, within Dshi_0590 at 580.815 kb on + strand, within Dshi_0590 at 580.899 kb on + strand, within Dshi_0590 at 580.928 kb on + strand, within Dshi_0590 at 580.933 kb on + strand, within Dshi_0590 at 580.970 kb on - strand, within Dshi_0590 at 580.991 kb on + strand, within Dshi_0590 at 580.991 kb on + strand, within Dshi_0590 at 580.999 kb on - strand, within Dshi_0590 at 581.148 kb on + strand, within Dshi_0590 at 581.181 kb on - strand at 582.363 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM remove 580,440 + Dshi_0590 0.13 +0.2 580,443 - Dshi_0590 0.14 -1.5 580,523 - Dshi_0590 0.22 -2.1 580,815 + Dshi_0590 0.53 -1.2 580,899 + Dshi_0590 0.62 +0.3 580,928 + Dshi_0590 0.65 -0.6 580,933 + Dshi_0590 0.66 -1.1 580,970 - Dshi_0590 0.70 +0.3 580,991 + Dshi_0590 0.72 +1.8 580,991 + Dshi_0590 0.72 -0.4 580,999 - Dshi_0590 0.73 +0.6 581,148 + Dshi_0590 0.89 -0.1 581,181 - -1.0 582,363 + +0.7
Or see this region's nucleotide sequence