Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0312

Experiment: m.b. Chlorite 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0311 and Dshi_0312 are separated by 56 nucleotidesDshi_0312 and Dshi_0313 are separated by 179 nucleotides Dshi_0311: Dshi_0311 - transcriptional regulator, LuxR family (RefSeq), at 300,364 to 300,975 _0311 Dshi_0312: Dshi_0312 - N-acyl-L-homoserine lactone synthetase-like protein (RefSeq), at 301,032 to 301,619 _0312 Dshi_0313: Dshi_0313 - AAA ATPase central domain protein (RefSeq), at 301,799 to 303,109 _0313 Position (kb) 301 302Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 300.171 kb on + strandat 300.173 kb on + strandat 300.238 kb on + strandat 300.336 kb on - strandat 300.368 kb on + strandat 300.388 kb on - strandat 300.445 kb on - strand, within Dshi_0311at 300.463 kb on + strand, within Dshi_0311at 300.484 kb on + strand, within Dshi_0311at 300.490 kb on - strand, within Dshi_0311at 300.511 kb on + strand, within Dshi_0311at 300.516 kb on + strand, within Dshi_0311at 300.516 kb on + strand, within Dshi_0311at 300.518 kb on + strand, within Dshi_0311at 300.536 kb on - strand, within Dshi_0311at 300.630 kb on + strand, within Dshi_0311at 300.638 kb on - strand, within Dshi_0311at 300.649 kb on - strand, within Dshi_0311at 300.657 kb on + strand, within Dshi_0311at 300.669 kb on + strand, within Dshi_0311at 300.714 kb on + strand, within Dshi_0311at 300.722 kb on - strand, within Dshi_0311at 300.804 kb on + strand, within Dshi_0311at 300.915 kb on - strandat 300.965 kb on - strandat 300.977 kb on - strandat 300.978 kb on - strandat 301.022 kb on + strandat 301.112 kb on - strand, within Dshi_0312at 301.137 kb on + strand, within Dshi_0312at 301.182 kb on + strand, within Dshi_0312at 301.220 kb on + strand, within Dshi_0312at 301.239 kb on - strand, within Dshi_0312at 301.323 kb on - strand, within Dshi_0312at 301.436 kb on - strand, within Dshi_0312at 301.453 kb on - strand, within Dshi_0312at 301.479 kb on - strand, within Dshi_0312at 301.604 kb on - strandat 301.604 kb on - strandat 301.636 kb on + strandat 301.636 kb on + strandat 301.777 kb on + strandat 301.808 kb on - strandat 301.884 kb on + strandat 301.903 kb on + strandat 302.083 kb on + strand, within Dshi_0313at 302.267 kb on + strand, within Dshi_0313at 302.275 kb on - strand, within Dshi_0313at 302.613 kb on - strand, within Dshi_0313

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.5 mM
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300,171 + -0.8
300,173 + +0.9
300,238 + -1.5
300,336 - -0.4
300,368 + -0.2
300,388 - -0.2
300,445 - Dshi_0311 0.13 +0.4
300,463 + Dshi_0311 0.16 +1.2
300,484 + Dshi_0311 0.20 -3.2
300,490 - Dshi_0311 0.21 -0.4
300,511 + Dshi_0311 0.24 -0.3
300,516 + Dshi_0311 0.25 +1.0
300,516 + Dshi_0311 0.25 +1.1
300,518 + Dshi_0311 0.25 -1.2
300,536 - Dshi_0311 0.28 -0.7
300,630 + Dshi_0311 0.43 +4.4
300,638 - Dshi_0311 0.45 +0.9
300,649 - Dshi_0311 0.47 +0.7
300,657 + Dshi_0311 0.48 +0.5
300,669 + Dshi_0311 0.50 +0.4
300,714 + Dshi_0311 0.57 -0.3
300,722 - Dshi_0311 0.58 +0.5
300,804 + Dshi_0311 0.72 +3.4
300,915 - -0.5
300,965 - -0.2
300,977 - -1.3
300,978 - +1.7
301,022 + -1.9
301,112 - Dshi_0312 0.14 -0.6
301,137 + Dshi_0312 0.18 -0.7
301,182 + Dshi_0312 0.26 +0.6
301,220 + Dshi_0312 0.32 +0.1
301,239 - Dshi_0312 0.35 +1.4
301,323 - Dshi_0312 0.49 +0.7
301,436 - Dshi_0312 0.69 +1.0
301,453 - Dshi_0312 0.72 +1.3
301,479 - Dshi_0312 0.76 -0.6
301,604 - +0.1
301,604 - +0.3
301,636 + +0.0
301,636 + +1.8
301,777 + +2.7
301,808 - +0.4
301,884 + -2.4
301,903 + +0.4
302,083 + Dshi_0313 0.22 +0.4
302,267 + Dshi_0313 0.36 +1.8
302,275 - Dshi_0313 0.36 +0.4
302,613 - Dshi_0313 0.62 -2.4

Or see this region's nucleotide sequence